BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZF12RM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1613 1546 0.0
>3x_Contig1613
Length = 13977
Score = 1546 bits (780), Expect = 0.0
Identities = 870/890 (97%), Gaps = 8/890 (0%)
Strand = Plus / Minus
Query: 47 cagaagataggacgangagccttattagcagaaagggaaaaggaattgcatagattagct 106
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1470 cagaagataggacga-gagccttattagcagaaagggaaaaggaattgcatagattagct 1412
Query: 107 caaggattaatggaatacgaaacattagatagtaccgaaattcagaaggtatgcaaagga 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1411 caaggattaatggaatacgaaacattagatagtaccgaaattcagaaggtatgcaaagga 1352
Query: 167 gaacctatcaataaaatgaaaatggccactactacggtggttgaaggaccagacagcgat 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1351 gaacctatcaataaaatgaaaatggccactactacggtggttgaaggaccagacagcgat 1292
Query: 227 gatcgtaaggaaatcggcggtgataaatcaaaaattccggtactgattaaagcatgatca 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1291 gatcgtaaggaaatcggcggtgataaatcaaaaattccggtactgattaaagcatgatca 1232
Query: 287 gacgcagaactaaaacgtcattggatacggactcctagcattacaccattgattgaacat 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1231 gacgcagaactaaaacgtcattggatacggactcctagcattacaccattgattgaacat 1172
Query: 347 ttcaccgaccatctttctgtatctgcatttgacctgtttgaagaaccccactacaatggt 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1171 ttcaccgaccatctttctgtatctgcatttgacctgtttgaagaaccccactacaatggt 1112
Query: 407 tatgttgcaacttgtacagaatacccaaattgagtggttaattttaaaagtgttatatga 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1111 tatgttgcaacttgtacagaatacccaaattgagtggttaattttaaaagtgttatatga 1052
Query: 467 aattacagatcatagcattttcacataataaagcataaaagcattgacgtgtcttgtaaa 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1051 aattacagatcatagcattttcacataataaagcataaaagcattgacgtgtcttgtaaa 992
Query: 527 tataacattggccggccttcttgaagaagcggcagtcactactttacccctgtcgaaaga 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 991 tataacattggccggccttcttgaagaagcggcagtcactactttacccctgtcgaaaga 932
Query: 587 ctataaatgaagataatagttctcttcgcaagtatatatgcatatttgtataacaattat 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931 ctataaatgaagataatagttctcttcgcaagtatatatgcatatttgtataacaattat 872
Query: 647 tcgtatgaatgaatgaactttangaagttttcattgagaactctacttaacttgtatact 706
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 871 tcgtatgaatgaatgaactttaggaagttttcattgagaactctacttaacttgtatact 812
Query: 707 actacactttcaactttttagaatccggttccgttgntagctcagcggagctatcacgtt 766
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 811 actacactttcaactttttagaatccggttccgttgtaagctcagcggagctatcacgtt 752
Query: 767 gttgcttttgtctgcgcatcctatcta-cagcagcattggatttttgcagt-atgcaa-t 823
||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||| |
Sbjct: 751 gttgcttttgtctgcgcatcctatctaccagcagcattggattttggcagtaatgcaatt 692
Query: 824 ttgcgtcaattttagttgccttttcttt-gaaagtgttttcacgttcaaaatcatctgcc 882
||||||||||||||||||||| |||||| |||||||||| ||||||||||||||| |||
Sbjct: 691 ttgcgtcaattttagttgcctcttctttggaaagtgtttcaacgttcaaaatcatc-gcc 633
Query: 883 tga-acttttctattaacgctgttaaaggttgcaa-tttaaattagatgg 930
||| ||| | ||||| ||||||||||| |||||| ||||||||||||||
Sbjct: 632 tgacactctcgtattagcgctgttaaagtttgcaattttaaattagatgg 583
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6857
Number of Sequences: 1807
Number of extensions: 6857
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)