BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZG01FM1.SCF screened BAC_end
(904 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1671 1425 0.0
>3x_Contig1671
Length = 12265
Score = 1425 bits (719), Expect = 0.0
Identities = 789/806 (97%), Gaps = 5/806 (0%)
Strand = Plus / Plus
Query: 86 ctctagttgttcatgcttcgctttcacttcatcgtccattagtaacattaaatcatcaga 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6460 ctctagttgttcatgcttcgctttcacttcatcgtccattagtaacattaaatcatcaga 6519
Query: 146 tccactttcaccgctggagtaccgttgaattagtgagttagtgtgatagaaattcgtttt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6520 tccactttcaccgctggagtaccgttgaattagtgagttagtgtgatagaaattcgtttt 6579
Query: 206 ctgtttcaattcctccatcttctcttgatgtaaggatattaatgctgagagcctcgactc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6580 ctgtttcaattcctccatcttctcttgatgtaaggatattaatgctgagagcctcgactc 6639
Query: 266 atattttttattgagcatgagatagaatcttgttatggcaagccttatgcatattagtaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6640 atattttttattgagcatgagatagaatcttgttatggcaagccttatgcatattagtaa 6699
Query: 326 agctagtgctacaatgctgcataagatagcacgcgaagatgaatacttcaaataaacata 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6700 agctagtgctacaatgctgcataagatagcacgcgaagatgaatacttcaaataaacata 6759
Query: 386 tgcaattatgcaaaccaataacgtcaaataataataagttactgttgcacgtaaactttt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6760 tgcaattatgcaaaccaataacgtcaaataataataagttactgttgcacgtaaactttt 6819
Query: 446 ggctctatcttcgattcccttcaatttcgtttcgtagtcatgtatcttattcgttatgga 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6820 ggctctatcttcgattcccttcaatttcgtttcgtagtcatgtatcttattcgttatgga 6879
Query: 506 agataagtctttgttatacctttgaactaacttcttaacatcattatcgccacttacaat 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6880 agataagtctttgttatacctttgaactaacttcttaacatcattatcgccacttacaat 6939
Query: 566 ctttcgtacggcgctcaacatgttaaggtatcaatatctacttccctttgatgtccgatc 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6940 ctttcgtacggcgctcaacatgttaaggtatcaatatctacttccctttgatgtccgatc 6999
Query: 626 tcgagaaaccctttattttaggtagtccatttttttttacatagttgtttgtaggctata 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7000 tcgagaaaccctttattttaggtagtccatttttttttacatagttgtttgtaggctata 7059
Query: 686 atgatcctttaaatatcanatccatgttatttcttaatcatattgacgaaaaaattattg 745
|||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 7060 atgatcctttaaatatcaaatccatgttatttctaaatcatattgacg-aaaaattattg 7118
Query: 746 aaatttgagaattcgggaacagacgatgggatgacgcccaaacaagtcagtttgggtttc 805
||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 7119 aaattgaagaattcgggaacagacgatggaatgacgccaaaacaagtcagtttgggtttc 7178
Query: 806 -taaaaacttatttattcatacaaatatcgcttgggatactgtctttgcaccccaacctt 864
||||| ||||| ||| |||||||||||||||| |||||||| ||||||| ||||| |||
Sbjct: 7179 ttaaaaccttatatatccatacaaatatcgctt-ggatactgcctttgca-cccaaactt 7236
Query: 865 ctagttatgcccagtggtggatattt 890
||||||||||| ||| ||||||||||
Sbjct: 7237 ctagttatgccaagt-gtggatattt 7261
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6989
Number of Sequences: 1807
Number of extensions: 6989
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 904
length of database: 10,358,551
effective HSP length: 16
effective length of query: 888
effective length of database: 10,329,639
effective search space: 9172719432
effective search space used: 9172719432
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)