BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZG01RM1.SCF screened BAC_end
(894 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig864 1633 0.0
>3x_Contig864
Length = 2808
Score = 1633 bits (824), Expect = 0.0
Identities = 841/847 (99%)
Strand = Plus / Plus
Query: 48 ctcgcttctgacttcatttagcaattctaactgtttgtgagttgcagtatgtttctttct 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ctcgcttctgacttcatttagcaattctaactgtttgtgagttgcagtatgtttctttct 574
Query: 108 ttgatcgtattccaacattgccttcctgaaaaactgacctcctgacgagttcttctctat 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 ttgatcgtattccaacattgccttcctgaaaaactgacctcctgacgagttcttctctat 634
Query: 168 tccgtctataataattctcctagaatctttgattaatggttccatgtccttataaatcga 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 tccgtctataataattctcctagaatctttgattaatggttccatgtccttataaatcga 694
Query: 228 agggctcttgtgagaagttaaattctcacttccatctaaaatatagagtaagtaccatag 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 agggctcttgtgagaagttaaattctcacttccatctaaaatatagagtaagtaccatag 754
Query: 288 cttctcaaactgaggagaataaagctggtcaaccctccatactcttgccaaatgtaatgc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 cttctcaaactgaggagaataaagctggtcaaccctccatactcttgccaaatgtaatgc 814
Query: 348 taacgaactaaacatcttgctcgatgacaaccataatgacgcaattattaaccccaaaat 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 taacgaactaaacatcttgctcgatgacaaccataatgacgcaattattaaccccaaaat 874
Query: 408 cgtgtgttctacatttaattcagcatctgtgggaagaagtaactgtgatgcaaaccaatg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 cgtgtgttctacatttaattcagcatctgtgggaagaagtaactgtgatgcaaaccaatg 934
Query: 468 caatgatgaatgcaactcatggaatttataatcaagttctgggtgatgacaacaagctat 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 935 caatgatgaatgcaactcatggaatttataatcaagttctgggtgatgacaacaagctat 994
Query: 528 cgtacagatcgaggctaagagcagcggagaatcggaccataaggattgtacactaacacc 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 995 cgtacagatcgaggctaagagcagcggagaatcggaccataaggattgtacactaacacc 1054
Query: 588 tcctaaagtaaaaccaaataaatgagggctaaagtattgaataaaataatctagcaaaac 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1055 tcctaaagtaaaaccaaataaatgagggctaaagtattgaataaaataatctagcaaaac 1114
Query: 648 ttttgcctgttccttcgtaatcgaaccagcagttctaaagtctgtgacagtgacctttct 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1115 ttttgcctgttccttcgtaatcgaaccagcagttctaaagtctgtgacagtgacctttct 1174
Query: 708 gttgtcaattatttcatgatgagtactagtagtaacgctactctgctgntgttcattaaa 767
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1175 gttgtcaattatttcatgatgagtactagtagtaacgctactctgctgttgttcattaaa 1234
Query: 768 ggtggggtttccattaccccgcaaaggccgtatggaagttccatttgaaaattggagcga 827
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1235 ggtggggtttccattaccccgcaaaggcggtatggaagttccatttgaaaattggagcga 1294
Query: 828 agaatgagactgcggttgctgttgctgttgcttgtgccgttgcggttgcagaggcatttg 887
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||
Sbjct: 1295 agaatgagactgcggttgctgttgctgttgctgttgcggttgcggttgcagaggcagttg 1354
Query: 888 ctgctgc 894
|||||||
Sbjct: 1355 ctgctgc 1361
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5977
Number of Sequences: 1807
Number of extensions: 5977
Number of successful extensions: 85
Number of sequences better than 1.0e-20: 1
length of query: 894
length of database: 10,358,551
effective HSP length: 16
effective length of query: 878
effective length of database: 10,329,639
effective search space: 9069423042
effective search space used: 9069423042
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)