BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZG02FM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1113 848 0.0
3x_Contig1371 456 e-128
>3x_Contig1113
Length = 4340
Score = 848 bits (428), Expect = 0.0
Identities = 469/478 (98%), Gaps = 4/478 (0%)
Strand = Plus / Plus
Query: 446 tttctttactgaatgcgatgttatttgtaatgccaagtcgttttatatgactgcattttt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23 tttctttactgaatgcgatgttatttgtaatgccaagtcgttttatatgactgcattttt 82
Query: 506 g-gtaaactaattcccaccgtcagtctaactccagtaaataaacactttctcacttatag 564
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83 gcgtaaactaattcccaccgtcagtctaactccagtaaataaacactttctcacttatag 142
Query: 565 atactttctcatagatcaacttcctatactattaggctgtaatgtcgccataaacgccta 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 atactttctcatagatcaacttcctatactattaggctgtaatgtcgccataaacgccta 202
Query: 625 agacgaatgttgctcatacggctgttagatatcccacctatatcacgtgatagacatgct 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 agacgaatgttgctcatacggctgttagatatcccacctatatcacgtgatagacatgct 262
Query: 685 ttatttagttggtgttgaaaatccttcgaaagatagaanaaaaaattcaatcaacattaa 744
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 263 ttatttagttggtgttgaaaatccttcgaaagatagaaaaaaaaattcaatcaacattaa 322
Query: 745 aagcgtaataacaggacaaacatattatgtatcaagacgaccagagcgagntaaccaagt 804
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 323 aagcgtaataacaggacaaacatattatgtatcaagacgaccagagcgagtaaaccaagt 382
Query: 805 ctcttaacccagaattt-acgccaagtttggtgaaatacaataatcatgacgaaaggttt 863
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 383 ctcttaaaccagaatttaacgccaagtttggtgaaatacaataatcatgacgaaagg-tt 441
Query: 864 tgttgaggataagactagctagattcggaaggaaac-taccccagtatacaacatagt 920
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 442 tggtgaggataagactagctagattcggaaggaaacataccccagtatacaacatagt 499
>3x_Contig1371
Length = 6052
Score = 456 bits (230), Expect = e-128
Identities = 230/230 (100%)
Strand = Plus / Plus
Query: 86 atcttcaagttcaagaagcttggacgcttgttcaggacccatattgcacaatttgttcgc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5823 atcttcaagttcaagaagcttggacgcttgttcaggacccatattgcacaatttgttcgc 5882
Query: 146 ttgtcagttttcaatcccaagttaaactcagtaattctcttttctgaggtgttgttgatt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5883 ttgtcagttttcaatcccaagttaaactcagtaattctcttttctgaggtgttgttgatt 5942
Query: 206 ataactcgtctctacttgttagatgagatgagcgatgagatgagctagattgaaaatttt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5943 ataactcgtctctacttgttagatgagatgagcgatgagatgagctagattgaaaatttt 6002
Query: 266 atacagcttgtgaaaaatttctttttaagcccttagtgatgaagcagcaa 315
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6003 atacagcttgtgaaaaatttctttttaagcccttagtgatgaagcagcaa 6052
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7552
Number of Sequences: 1807
Number of extensions: 7552
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 2
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)