BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZG02RM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1799 1681 0.0
>3x_Contig1799
Length = 39855
Score = 1681 bits (848), Expect = 0.0
Identities = 868/872 (99%), Gaps = 2/872 (0%)
Strand = Plus / Minus
Query: 46 ctgcggacgcttcttcacacagtatgtctaccggaaagtggtttgctaccctaggaggtg 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24116 ctgcggacgcttcttcacacagtatgtctaccggaaagtggtttgctaccctaggaggtg 24057
Query: 106 tcactgtactacttggtgctggtgctggtgccttgcaatgggcctacaaagattcaaaaa 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24056 tcactgtactacttggtgctggtgctggtgccttgcaatgggcctacaaagattcaaaaa 23997
Query: 166 ttgaccaaatctttgccaaggaaagaagacagggtctacaccattgaagcaaaaattgac 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23996 ttgaccaaatctttgccaaggaaagaagacagggtctacaccattgaagcaaaaattgac 23937
Query: 226 caaaagcttgctgaacgtcggactcgtgcggttaaatactgagatttttatatattcttc 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23936 caaaagcttgctgaacgtcggactcgtgcggttaaatactgagatttttatatattcttc 23877
Query: 286 aattttgtactaatttaatgaacggttattaaacataccctacccaggtagcgccagttt 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23876 aattttgtactaatttaatgaacggttattaaacataccctacccaggtagcgccagttt 23817
Query: 346 tatttttttttatttattctgtcgttactttgttcttcgttatggaaaactgacgcacct 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23816 tatttttttttatttattctgtcgttactttgttcttcgttatggaaaactgacgcacct 23757
Query: 406 gtcggtttaatctttttttttttttatgattggtacttttacattgctttggttctattt 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23756 gtcggtttaatctttttttttttttatgattggtacttttacattgctttggttctattt 23697
Query: 466 tttgatcttcgatactttttttttaaggtactatttaagaacacagttacatattcgaca 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23696 tttgatcttcgatactttttttttaaggtactatttaagaacacagttacatattcgaca 23637
Query: 526 aactttaatcagtcaaagcaacggtaaaattaggattcttttcagtggttggttgtctca 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23636 aactttaatcagtcaaagcaacggtaaaattaggattcttttcagtggttggttgtctca 23577
Query: 586 tcgaatatttgaattataattggaggtaccaaattgtaatcagaaactttaaaatgtcaa 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23576 tcgaatatttgaattataattggaggtaccaaattgtaatcagaaactttaaaatgtcaa 23517
Query: 646 tctatttctctgtgttgttcatacttcttgtggcccaaatggctttcatgttcatgatag 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23516 tctatttctctgtgttgttcatacttcttgtggcccaaatggctttcatgttcatgatag 23457
Query: 706 ttatgcccttgcattatcagataaggaaaagattagtggttttctctgataattttttat 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23456 ttatgcccttgcattatcagataaggaaaagattagtggttttctctgataattttttat 23397
Query: 766 caggtcctcaatttagaactgtggtggctatattaagttgtttagtgatgctactgttca 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23396 caggtcctcaatttagaactgtggtggctatattaagttgtttagtgatgctactgttca 23337
Query: 826 ttgactcatggaaacgtgcacagcttcccagtgttctctcacgcagagaaaccacaaga- 884
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 23336 ttgactcatggaaacgtgcacagc-tcccagtgttctctcacgcagagaaaccacaagat 23278
Query: 885 gtggctagttcgtttgagacattgactacaag 916
|||||||||||||| ||||||||||||||||
Sbjct: 23277 gtggctagttcgttgaagacattgactacaag 23246
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,510
Number of Sequences: 1807
Number of extensions: 16510
Number of successful extensions: 327
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)