BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZG04FM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1760 1344 0.0
>3x_Contig1760
Length = 27266
Score = 1344 bits (678), Expect = 0.0
Identities = 716/725 (98%), Gaps = 3/725 (0%)
Strand = Plus / Plus
Query: 87 ctgcctctccttgcattaatagaaaagtcgctctcagggtttcttatcggatctgctatt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24355 ctgcctctccttgcattaatagaaaagtcgctctcagggtttcttatcggatctgctatt 24414
Query: 147 cccttatttgcatttgaagacatatccaaagcacccactatcgcaagctctcctgactgg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24415 cccttatttgcatttgaagacatatccaaagcacccactatcgcaagctctcctgactgg 24474
Query: 207 tcatggaaatcaagtaaaaacggaggaataatggttttacgctcattcaacgataaggaa 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24475 tcatggaaatcaagtaaaaacggaggaataatggttttacgctcattcaacgataaggaa 24534
Query: 267 gttaattggatttcaggttcattcaagtcaagctctctgtcgccgccttcgtacggatct 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24535 gttaattggatttcaggttcattcaagtcaagctctctgtcgccgccttcgtacggatct 24594
Query: 327 tgctgagctggtatatattcatcatcgtgaatgacgttatcaaaatcatcatcattatcg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24595 tgctgagctggtatatattcatcatcgtgaatgacgttatcaaaatcatcatcattatcg 24654
Query: 387 taccaatttctatcttgtgcagtaaaatccttggcgtcctttatatcttccacatcacta 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24655 taccaatttctatcttgtgcagtaaaatccttggcgtcctttatatcttccacatcacta 24714
Query: 447 ccttctgcatcgataagtgtgcctttggtcgcttcttctttttttaccatgaccactggt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24715 ccttctgcatcgataagtgtgcctttggtcgcttcttctttttttaccatgaccactggt 24774
Query: 507 tcagtgttttctgaaaactcattcaattttgctgcagtttgcttcgtaatacgtttcaaa 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24775 tcagtgttttctgaaaactcattcaattttgctgcagtttgcttcgtaatacgtttcaaa 24834
Query: 567 gtcaaaggcttgttgaattttggtttcacttgtacctttacagtagaaagctcatcttca 626
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 24835 gtcaaaggcttgttgaattttggtttcacttgtaccttcacagtagaaagctcatcttca 24894
Query: 627 tcgtcgtcttccttgtcatccaacggaagtttaaccacanattttttccttatggttctt 686
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 24895 tcgtcgtcttccttgtcatccaacggaagtttaaccacaaattttttccttatggttctt 24954
Query: 687 gcttggacagccgcttgattct-gctttggagactgcttatgtgcctgtaatttttcaaa 745
||| | |||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 24955 gctggaacagccgc-tgattctggctttggagactgcttatgtgcctgtaatttttcaaa 25013
Query: 746 aagttgcttcaaaaactcatctttgccctttaaatttccccaaacctttagcacccccga 805
|||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||
Sbjct: 25014 aagttgcttcaaaaactcatctttgccc-ttaaatttccccaaagccttagcacccccga 25072
Query: 806 tgaac 810
|||||
Sbjct: 25073 tgaac 25077
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7877
Number of Sequences: 1807
Number of extensions: 7877
Number of successful extensions: 77
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)