BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC50ZG04RM1.SCF screened BAC_end
         (892 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1142                                                        1594   0.0  

>3x_Contig1142 
          Length = 5741

 Score = 1594 bits (804), Expect = 0.0
 Identities = 838/848 (98%), Gaps = 2/848 (0%)
 Strand = Plus / Minus

                                                                        
Query: 47   tgaaatcatctttgtttaaatgatccaaaaaatcgtccattaccaaggcttcctttgaat 106
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1146 tgaaatcatctttgtttaaatgatccaaaaaatcgtccattaccaaggcttcctttgaat 1087

                                                                        
Query: 107  tttttgcatcttcaagcttatgtttataagccggatcctttaatacctcatctatacctt 166
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1086 tttttgcatcttcaagcttatgtttataagccggatcctttaatacctcatctatacctt 1027

                                                                        
Query: 167  gtaagtatcctgtagagcaatgtgcgaccaaaaacttgccagtatttgcaaggatttttt 226
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1026 gtaagtatcctgtagagcaatgtgcgaccaaaaacttgccagtatttgcaaggatttttt 967

                                                                        
Query: 227  tattctgatcttcttgtgcatattgcattaccttgtcatataaagtctttgcgtaaaacc 286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966  tattctgatcttcttgtgcatattgcattaccttgtcatataaagtctttgcgtaaaacc 907

                                                                        
Query: 287  ctggtgaacaaattatgatgcatttcagtgtgtcaaaatcgaaatgtctaaccatggacg 346
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906  ctggtgaacaaattatgatgcatttcagtgtgtcaaaatcgaaatgtctaaccatggacg 847

                                                                        
Query: 347  cataagtggctctgtaaaatttctctaccttgtcatcaaacttcattatatctgtacctc 406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846  cataagtggctctgtaaaatttctctaccttgtcatcaaacttcattatatctgtacctc 787

                                                                        
Query: 407  tcttcttctttggaatgctatattcgatcttatgctttaataccgtagagaatgaattga 466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786  tcttcttctttggaatgctatattcgatcttatgctttaataccgtagagaatgaattga 727

                                                                        
Query: 467  tcaagcaaatgtgggaaataccttcttgtaagacaacagctgccatatcagaacgaccct 526
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726  tcaagcaaatgtgggaaataccttcttgtaagacaacagctgccatatcagaacgaccct 667

                                                                        
Query: 527  caatattacaagcttgttttacgagattatccacgtatgaattgtaatcatctttgatca 586
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666  caatattacaagcttgttttacgagattatccacgtatgaattgtaatcatctttgatca 607

                                                                        
Query: 587  atgtgaatgggtaagagaaatcgatggtgaaactgaagaatttacccactggcaaatcct 646
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606  atgtgaatgggtaagagaaatcgatggtgaaactgaagaatttacccactggcaaatcct 547

                                                                        
Query: 647  ggttagcattcgaataatcatcttccgtagtgacacctttataccttagaaattcatgtt 706
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546  ggttagcattcgaataatcatcttccgtagtgacacctttataccttagaaattcatgtt 487

                                                                        
Query: 707  gaggctcanactctgaagagacgactttgattctc-atttttcaagctgtgtcgctttct 765
            |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 486  gaggctcaaactctgaagagacgactttgattctcaatttttcaagctgtgtcgctttct 427

                                                                        
Query: 766  tcttacccncttnctctgtcttggatgtgactttcttctttaagatgatctcatcatcag 825
            |||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 426  tcttacccccttcctctgtcttggatgtgactttcttcttaaagatgatctcatcatcag 367

                                                                        
Query: 826  tattgataatgttgtacagtgtgaataaatcttcttatncctgagg-tgaagaatcaaaa 884
            ||||||||||||||||||||||||||||||||||||   ||||||| |||||| ||||||
Sbjct: 366  tattgataatgttgtacagtgtgaataaatcttctttatcctgaggttgaagagtcaaaa 307

                    
Query: 885  tggctctt 892
            ||||||||
Sbjct: 306  tggctctt 299


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7491
Number of Sequences: 1807
Number of extensions: 7491
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 892
length of database: 10,358,551
effective HSP length: 16
effective length of query: 876
effective length of database: 10,329,639
effective search space: 9048763764
effective search space used: 9048763764
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)