BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZG05FM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1778 1461 0.0
>3x_Contig1778
Length = 27694
Score = 1461 bits (737), Expect = 0.0
Identities = 816/833 (97%), Gaps = 7/833 (0%)
Strand = Plus / Minus
Query: 87 ctccaagtttgtcaaactgagaagatggtgaaacccttgtgcagaagatgtcattaccga 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16662 ctccaagtttgtcaaactgagaagatggtgaaacccttgtgcagaagatgtcattaccga 16603
Query: 147 tggagcatattatactagtggattccaagttcgtcggaactgatattaatttcgatttat 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16602 tggagcatattatactagtggattccaagttcgtcggaactgatattaatttcgatttat 16543
Query: 207 ctgaaggaagaatctgtctaagatgactaaccactgaaaaatcattaattggtatggtgg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16542 ctgaaggaagaatctgtctaagatgactaaccactgaaaaatcattaattggtatggtgg 16483
Query: 267 gttcataaacagaagccatgaattcctctttgtctttctttgtcatatcagactctggtt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16482 gttcataaacagaagccatgaattcctctttgtctttctttgtcatatcagactctggtt 16423
Query: 327 ttcttcttgcgttgacaacatatttggggagatatgtaatggacccatcatctaattgta 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16422 ttcttcttgcgttgacaacatatttggggagatatgtaatggacccatcatctaattgta 16363
Query: 387 aaagtatagctttcgtagtaattccaaatttagttttggataatgcaagtgaatgtatga 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16362 aaagtatagctttcgtagtaattccaaatttagttttggataatgcaagtgaatgtatga 16303
Query: 447 tctgagggaagtaatatgcgttgctaatcgttgccggtttcacaatatcgtctagcgggt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16302 tctgagggaagtaatatgcgttgctaatcgttgccggtttcacaatatcgtctagcgggt 16243
Query: 507 tcactaagctccctggaagggatctcctttcatcaggaaccagcgattcgtaaaactcaa 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16242 tcactaagctccctggaagggatctcctttcatcaggaaccagcgattcgtaaaactcaa 16183
Query: 567 cgactacaagcttttgttccggtattggagctgaactgaaataactgtatatgcaccagt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16182 cgactacaagcttttgttccggtattggagctgaactgaaataactgtatatgcaccagt 16123
Query: 627 gttctcctatcacaaggtttactgggcaggttaagtccacaaactcctcatgcttaacag 686
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 16122 gttctcctatcacaaggtttactggcaaggttaagtccacaaactcctcatgcttaacag 16063
Query: 687 tgtaaagagtctggccagtaaccgtgtcaaatatttctagtaacaaggaattctctacag 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16062 tgtaaagagtctggccagtaaccgtgtcaaatatttctagtaacaaggaattctctacag 16003
Query: 747 aattgcccatcaaatagcctcccatattatggattgaagtacttgtataatacagtntct 806
|||||||||||||||||||||| |||||| ||||||| |||||||||||||||||| |||
Sbjct: 16002 aattgcccatcaaatagcctccaatatta-ggattgaggtacttgtataatacagt-tct 15945
Query: 807 gttttctatgattgcacctaaacctggaacgtggccttttatctttgacagcatgaccaa 866
|||| ||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 15944 gtttcctaggattgcacctaaacctggaacgtggcc-tttatctctgacagcatgaccaa 15886
Query: 867 caattcgtttcatttcccccctacgttttctttgatagggtcggtaaaagggc 919
|||| || |||| |||||||||||| ||||| ||||| ||||||||| |||||
Sbjct: 15885 caatacg-ttca-ttcccccctacg-tttctctgata-ggtcggtaagagggc 15837
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5671
Number of Sequences: 1807
Number of extensions: 5671
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)