BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZG06FM1.SCF screened BAC_end
(959 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1757 1324 0.0
>3x_Contig1757
Length = 24754
Score = 1324 bits (668), Expect = 0.0
Identities = 763/787 (96%), Gaps = 6/787 (0%)
Strand = Plus / Plus
Query: 86 cccttacagaaacgaattaccgaaaaacctttgttcccgtttgtttctactttgttacgc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15258 cccttacagaaacgaattaccgaaaaacctttgttcccgtttgtttctactttgttacgc 15317
Query: 146 aaatcctgtatgtttccagatggaaactcggaccatttcgcgtacagaacgttattacca 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15318 aaatcctgtatgtttccagatggaaactcggaccatttcgcgtacagaacgttattacca 15377
Query: 206 agttattccgctcgggtctctccagttcgaaattcgtcgttcccaaccatacaatttctc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15378 agttattccgctcgggtctctccagttcgaaattcgtcgttcccaaccatacaatttctc 15437
Query: 266 ctttgtttcgcatatgtttcctacagccattcggtttacattgaccatttccgttaagta 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15438 ctttgtttcgcatatgtttcctacagccattcggtttacattgaccatttccgttaagta 15497
Query: 326 attgtctgttttgcccaacagcgtccgactcgaaaaattatgcgatgtatgggtgcggaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15498 attgtctgttttgcccaacagcgtccgactcgaaaaattatgcgatgtatgggtgcggaa 15557
Query: 386 gatcacggcagtagtctggcatcttcggaaaaagactgcccacacgtgaccgagtcggaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15558 gatcacggcagtagtctggcatcttcggaaaaagactgcccacacgtgaccgagtcggaa 15617
Query: 446 cattgcgtgccagaacgtttcataacgagtcggtttttttcggagaaaatgcgtcagaaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15618 cattgcgtgccagaacgtttcataacgagtcggtttttttcggagaaaatgcgtcagaaa 15677
Query: 506 cgggatgggaattggaaacaagtgcgaaacgacgtagaactgatctacaatatttatctt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15678 cgggatgggaattggaaacaagtgcgaaacgacgtagaactgatctacaatatttatctt 15737
Query: 566 ttttcatcgtctgaatgctaacaatgtttgtaagttctttttaacaacgatgtcataccg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15738 ttttcatcgtctgaatgctaacaatgtttgtaagttctttttaacaacgatgtcataccg 15797
Query: 626 ataagttacagattaaacagaat-aaggggagggactttggtttgtaggttttggataaa 684
||||||||||||| ||||||||| |||||||||||||||||||||||||||| | ||||
Sbjct: 15798 ataagttacagataaaacagaataaaggggagggactttggtttgtaggtttggaataac 15857
Query: 685 cttnacttcataaaactatatacactggctttaagttcccccaacttaagaaagtg-tgc 743
| ||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct: 15858 ttaaacttcataaaactatatacactggctttaagttccccaaacttaag-aagtgttgc 15916
Query: 744 ttttattgactctttaacgatgttctggggggtcgaaaagtgggataagtttcaagttct 803
||| ||||||||||| |||||||||| |||||||||||||||||||||||| ||||| ||
Sbjct: 15917 tttcattgactcttt-acgatgttct-gggggtcgaaaagtgggataagttccaagtact 15974
Query: 804 ttttttctaattcaccgacattcacggttgaaccatggtctgtttttactggggaaaccc 863
| ||||||| ||||||||||||||| ||||||||||||||||| |||| ||||||||
Sbjct: 15975 catattctaatacaccgacattcacggctgaaccatggtctgtttatact-gggaaaccg 16033
Query: 864 aaatcat 870
|||||||
Sbjct: 16034 aaatcat 16040
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6311
Number of Sequences: 1807
Number of extensions: 6311
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 959
length of database: 10,358,551
effective HSP length: 16
effective length of query: 943
effective length of database: 10,329,639
effective search space: 9740849577
effective search space used: 9740849577
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)