BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZG06RM1.SCF screened BAC_end
(952 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1457 1550 0.0
>3x_Contig1457
Length = 7441
Score = 1550 bits (782), Expect = 0.0
Identities = 880/908 (96%), Gaps = 4/908 (0%)
Strand = Plus / Plus
Query: 47 tacacagatgaagccaatgggttgagagttgacccattggtggttttgttcttggctgtt 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2343 tacacagatgaagccaatgggttgagagttgacccattggtggttttgttcttggctgtt 2402
Query: 107 gcatttgtgttctctgttgttgctttgcacgtcgttgctaaggtctctggtaagatcttt 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2403 gcatttgtgttctctgttgttgctttgcacgtcgttgctaaggtctctggtaagatcttt 2462
Query: 167 taaaaagcatgaattacactcaatatacttaaaagaatattgacaattgtatatatatcg 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2463 taaaaagcatgaattacactcaatatacttaaaagaatattgacaattgtatatatatcg 2522
Query: 227 agagagtttatgtgcgttttactccattggaaattcaccctcaagaaacttagtcctgtt 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2523 agagagtttatgtgcgttttactccattggaaattcaccctcaagaaacttagtcctgtt 2582
Query: 287 tgttcatcacctttgtttgtcatgaatccaacaacatattgcttttagggatgaaacagt 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2583 tgttcatcacctttgtttgtcatgaatccaacaacatattgcttttagggatgaaacagt 2642
Query: 347 aatatttcgttgtcattgaaaggtaaataaacccgcaaaggtgttatattgagttgaatt 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2643 aatatttcgttgtcattgaaaggtaaataaacccgcaaaggtgttatattgagttgaatt 2702
Query: 407 ctgcttgcaaagtcaagtcacatgctactattcactttttatatacaagggtattgaatg 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2703 ctgcttgcaaagtcaagtcacatgctactattcactttttatatacaagggtattgaatg 2762
Query: 467 tggtaatctaaatttttttttttggttcatcatttttatggatgacgcgcttctcttctt 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2763 tggtaatctaaatttttttttttggttcatcatttttatggatgacgcgcttctcttctt 2822
Query: 527 ctataactcattttcagatataataaagtataatataatattaatctcatcgtattcaag 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2823 ctataactcattttcagatataataaagtataatataatattaatctcatcgtattcaag 2882
Query: 587 agatcccaaattcgacactaggagtgctgggcgaatattacttcttgagtcgagtattga 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2883 agatcccaaattcgacactaggagtgctgggcgaatattacttcttgagtcgagtattga 2942
Query: 647 tgaatggctcaataaataaaaaaaggaatgcctacagtagtaaattagtgttgttacana 706
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 2943 tgaatggctcaataaataaaaaaaggaatgcctacagtagtaaattagtgttgttacaaa 3002
Query: 707 tctttcaataaaatgttcaccacatcgttggcattttcatgccacacaaaaatgtttccc 766
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 3003 tctttcaataaaatgttcaccacatcgttggcattttcatgcaacac-aaaatgtttccc 3061
Query: 767 tgattcttgattgtattcccagccaattgggctatgtaatttctcggtacttggttccca 826
|||||||||||||||||||||||| | | ||||||||||||||||| ||||| ||||||
Sbjct: 3062 tgattcttgattgtattcccagcccaattggctatgtaatttctcgtaacttgtttccca 3121
Query: 827 gnttttgaatcttgaattacccttttacttggatttcgacgttgggccaacttttttgga 886
| ||||| |||| ||||| ||| |||| | ||||||||||||||||||||| ||| |
Sbjct: 3122 gtttttggatctgaaatta-cctcttacctcgatttcgacgttgggccaactctttggac 3180
Query: 887 ccaccactatggcgaatgggatacttaa-gcatgtgacttgtgaatcttggcacc-atac 944
|||| |||||||||| |||||||| ||| |||||||||| |||||||||||||| ||||
Sbjct: 3181 ccacaactatggcgattgggatacctaaggcatgtgactgttgaatcttggcaccaatac 3240
Query: 945 ttgtcttt 952
||||||||
Sbjct: 3241 ttgtcttt 3248
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,519
Number of Sequences: 1807
Number of extensions: 13519
Number of successful extensions: 109
Number of sequences better than 1.0e-20: 1
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)