BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC50ZG07FM1.SCF screened BAC_end
         (904 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1220                                                        1560   0.0  

>3x_Contig1220 
          Length = 4729

 Score = 1560 bits (787), Expect = 0.0
 Identities = 810/818 (99%)
 Strand = Plus / Minus

                                                                        
Query: 87   tggtgtaccgtccgcattccaggtttcgaaatacctataattcaaatgggtggttggcgc 146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4258 tggtgtaccgtccgcattccaggtttcgaaatacctataattcaaatgggtggttggcgc 4199

                                                                        
Query: 147  atgtggattaattggatgaataaccatagagagaccacaggcgaagaattttactcctgt 206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4198 atgtggattaattggatgaataaccatagagagaccacaggcgaagaattttactcctgt 4139

                                                                        
Query: 207  tgcatctggttcaccagttgcaggatcaataggcagatgcaaatttttgtggtccgcttt 266
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4138 tgcatctggttcaccagttgcaggatcaataggcagatgcaaatttttgtggtccgcttt 4079

                                                                        
Query: 267  catagccttgatagcaggtggactcaagttcccatgaaccacactgacattaacaccacc 326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4078 catagccttgatagcaggtggactcaagttcccatgaaccacactgacattaacaccacc 4019

                                                                        
Query: 327  tttctcaaacgtagtaccattctgcaacaccatcgagacaccgccaccaccgttgttgcc 386
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4018 tttctcaaacgtagtaccattctgcaacaccatcgagacaccgccaccaccgttgttgcc 3959

                                                                        
Query: 387  acgatcccaagaatcggcttgaaactttacagtatccaaagtttccagacccttggtaat 446
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3958 acgatcccaagaatcggcttgaaactttacagtatccaaagtttccagacccttggtaat 3899

                                                                        
Query: 447  ttcttgctgtttccggcgcactaaggcctccattctctctctaattggcacttgtgaatc 506
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3898 ttcttgctgtttccggcgcactaaggcctccattctctctctaattggcacttgtgaatc 3839

                                                                        
Query: 507  tgtcatcgcacaatgataatatttagaatgtgtgttaagatgaaccggtcgttgagtttc 566
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3838 tgtcatcgcacaatgataatatttagaatgtgtgttaagatgaaccggtcgttgagtttc 3779

                                                                        
Query: 567  tgtttgctttaccagacaagtatactggatgtaaagttttatcaatgattctgcttgatt 626
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3778 tgtttgctttaccagacaagtatactggatgtaaagttttatcaatgattctgcttgatt 3719

                                                                        
Query: 627  ggagagaaaagggcagtatagatccaatgcttctcttctcatttcagttggtgagtcgaa 686
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3718 ggagagaaaagggcagtatagatccaatgcttctcttctcatttcagttggtgagtcgaa 3659

                                                                        
Query: 687  tggaataattcactttcgttaatatagtcaaaaaaaaaaaatccaaaaagcaagcagact 746
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3658 tggaataattcactttcgttaatatagtcaaaaaaaaaaaatccaaaaagcaagcagact 3599

                                                                        
Query: 747  tcaagattcagacctggtgataatttgcataaaggtaattgaagaaaaaaggctagctag 806
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 3598 tcaagattcagacctggtgataatttggataaaggtaattgaagaaaaaaggctagctag 3539

                                                                        
Query: 807  tttccaccgcatacaggaagagggaaagatacgagatacaaggatctcatcacaatattg 866
            ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||
Sbjct: 3538 tttccaccgcatacaggaagaggaaaagatacgagatacaagaatctcatcacaatagtg 3479

                                                  
Query: 867  gcagttcgagcaccccaagnagaatataatacactact 904
            ||||| |||||||| ||||  |||||||||||||||||
Sbjct: 3478 gcagtccgagcaccacaagatgaatataatacactact 3441


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,005
Number of Sequences: 1807
Number of extensions: 12005
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 904
length of database: 10,358,551
effective HSP length: 16
effective length of query: 888
effective length of database: 10,329,639
effective search space: 9172719432
effective search space used: 9172719432
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)