BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZG08RM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig275 1271 0.0
>3x_Contig275
Length = 1611
Score = 1271 bits (641), Expect = 0.0
Identities = 730/755 (96%), Gaps = 4/755 (0%)
Strand = Plus / Plus
Query: 160 ggtacttgcaatgataatgagttactgcaactaccatttgatctcttgcaggaagaaggt 219
|||| ||| ||||||||||||||| || || || |||||||||||||||||||||||||
Sbjct: 411 ggtaattgaaatgataatgagttaatgaaaataaaatttgatctcttgcaggaagaaggt 470
Query: 220 ttattgttcttgtgggtaaccggccgtgctatcgaagtagggaaagaatcattgcagaat 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 ttattgttcttgtgggtaaccggccgtgctatcgaagtagggaaagaatcattgcagaat 530
Query: 280 tggggttacgaagtaataaatgaaatatcttggatcaagacaaaccaattaggaagaaca 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 tggggttacgaagtaataaatgaaatatcttggatcaagacaaaccaattaggaagaaca 590
Query: 340 attgtgacaggtagaactggccattggttgaaccacagtaaagagcatttactcgtcggg 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 attgtgacaggtagaactggccattggttgaaccacagtaaagagcatttactcgtcggg 650
Query: 400 gtcaaaggcaatccggaatggctaaacagaaaaatagacattgacttgatcattagcgca 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 gtcaaaggcaatccggaatggctaaacagaaaaatagacattgacttgatcattagcgca 710
Query: 460 actagagaaaccagtagaaagccggacgaattgtatggaatcattgaaagacttgtcggt 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 actagagaaaccagtagaaagccggacgaattgtatggaatcattgaaagacttgtcggt 770
Query: 520 acacatgcccgtaaacttgaaattttcggtagggaccataacatccgtcctggatggttc 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 acacatgcccgtaaacttgaaattttcggtagggaccataacatccgtcctggatggttc 830
Query: 580 acgataggaaatcaagtgacaggctcatctatccatgaagtggatgtgaaaaggaaatac 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 acgataggaaatcaagtgacaggctcatctatccatgaagtggatgtgaaaaggaaatac 890
Query: 640 gaaagattcatggaaaaatcaaagaattcaaagacaaactaaagatgtaatactctcttt 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891 gaaagattcatggaaaaatcaaagaattcaaagacaaactaaagatgtaatactctcttt 950
Query: 700 acttcaaatgtcctagcttttatttgtcgatacacagtatccattangagtctgtatgtg 759
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 951 acttcaaatgtcctagcttttatttgtcgatacacagtatccattaggagtctgtatgtg 1010
Query: 760 ttcctttctaactttcttctttttttt-atttatgtcatacgccctttgtattacaaacg 818
|||||| || ||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 1011 ttccttcttacttttcttcttttttttaatttatgtcatacgcccttgtaattacaaacg 1070
Query: 819 ttacattacccacaagttcgtgctacactttaagcagc-ataggccatctttttgattcc 877
|||||||||||||||||||||||||||| ||||||||| |||||| ||||||| ||||
Sbjct: 1071 ttacattacccacaagttcgtgctacac-ttaagcagcaataggcaatcttttgatttcc 1129
Query: 878 ataa-catgcctgatcctacggncgttctattagc 911
|||| |||| |||||||||||| ||||||||||||
Sbjct: 1130 ataaccatggctgatcctacgggcgttctattagc 1164
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7602
Number of Sequences: 1807
Number of extensions: 7602
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)