BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZG09RM1.SCF screened BAC_end
(970 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1669 1528 0.0
>3x_Contig1669
Length = 15503
Score = 1528 bits (771), Expect = 0.0
Identities = 826/838 (98%), Gaps = 6/838 (0%)
Strand = Plus / Minus
Query: 50 cgatgtagttcgattccattatagagctatcgttagatttttctaagtcatcatgataag 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9417 cgatgtagttcgattccattatagagctatcgttagatttttctaagtcatcatgataag 9358
Query: 110 tatacggtaacttgaaaggccaatgaccagatctttgaaaatactctagagcaaccatga 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9357 tatacggtaacttgaaaggccaatgaccagatctttgaaaatactctagagcaaccatga 9298
Query: 170 ttacgtatcctagaccttgccatgccgcacaagaaataaacaacggttttaaattggtcg 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9297 ttacgtatcctagaccttgccatgccgcacaagaaataaacaacggttttaaattggtcg 9238
Query: 230 caccaatatgggatatataaaccgggaactggtctgtatgcatgaaccaataaatgggat 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9237 caccaatatgggatatataaaccgggaactggtctgtatgcatgaaccaataaatgggat 9178
Query: 290 gaccttgtcctgcccaacatgccaacatcgcaattagcatcccataccatggaatgaaag 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9177 gaccttgtcctgcccaacatgccaacatcgcaattagcatcccataccatggaatgaaag 9118
Query: 350 ctatccagggaaagataaaccagtagttacctggacgtggaaacatattagtatagtctt 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9117 ctatccagggaaagataaaccagtagttacctggacgtggaaacatattagtatagtctt 9058
Query: 410 gcggtttacgtttatacctgtatcaaatccaatccttatgagaatgtctaccagtgatat 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9057 gcggtttacgtttatacctgtatcaaatccaatccttatgagaatgtctaccagtgatat 8998
Query: 470 tctttaaaggaatgagctatgttgaccttgtcccgtcaaattcggctggtataatatact 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8997 tctttaaaggaatgagctatgttgaccttgtcccgtcaaattcggctggtataatatact 8938
Query: 530 cattcttttccttatatatctaaaacccgacttccacgaataaaaaacaatataaactat 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8937 cattcttttccttatatatctaaaacccgacttccacgaataaaaaacaatataaactat 8878
Query: 590 atttgacatatttatatatatatgcttttatatggcatggcttgtgtatggcactgcagt 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8877 atttgacatatttatatatatatgcttttatatggcatggcttgtgtatggcactgcagt 8818
Query: 650 gatgctgtcactgatgccttaaattacaacttgctattcactgaatgtaactgtcaatcg 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8817 gatgctgtcactgatgccttaaattacaacttgctattcactgaatgtaactgtcaatcg 8758
Query: 710 gctcgatgatacactagcttgagacaccctgcgcgatttctgggcgccttgttgcgatat 769
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 8757 gctcgatgatacactagcttgagacaccctgcgcgatttctgggcgctttgttgcgatat 8698
Query: 770 ttgcttcagtaaaaaaaaaaagtttntctttcgatgctttactaataggtttcggaggct 829
||||| |||||||||||||| |||| ||||||||||||||||||||||||||| ||||||
Sbjct: 8697 ttgctccagtaaaaaaaaaaggttt-tctttcgatgctttactaataggtttc-gaggct 8640
Query: 830 ttagaagcagggatggataacggtaatggatgatatttaaatttttccactccgagta 887
| || |||| ||||||||||| |||||||||||||| ||| ||||||||||||||||
Sbjct: 8639 taag-agcaaggatggataac-gtaatggatgatatctaa--ttttccactccgagta 8586
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,301
Number of Sequences: 1807
Number of extensions: 13301
Number of successful extensions: 104
Number of sequences better than 1.0e-20: 1
length of query: 970
length of database: 10,358,551
effective HSP length: 16
effective length of query: 954
effective length of database: 10,329,639
effective search space: 9854475606
effective search space used: 9854475606
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)