BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZG10FM1.SCF screened BAC_end
(905 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig682 1421 0.0
>3x_Contig682
Length = 2655
Score = 1421 bits (717), Expect = 0.0
Identities = 763/773 (98%), Gaps = 4/773 (0%)
Strand = Plus / Plus
Query: 86 tatacactgggttcatccaattaggtgctggtttgtctgttgggttaagtggtctagctg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1883 tatacactgggttcatccaattaggtgctggtttgtctgttgggttaagtggtctagctg 1942
Query: 146 ctggtttcgccattggtattgttggtgatgcaggtgttagaggtactgctcaacaaccaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1943 ctggtttcgccattggtattgttggtgatgcaggtgttagaggtactgctcaacaaccaa 2002
Query: 206 gattattcgttggtatgattttgatcttgattttcgctgaagttttgggtttgtacggtt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2003 gattattcgttggtatgattttgatcttgattttcgctgaagttttgggtttgtacggtt 2062
Query: 266 tgattgttgccctattgttgaactctagagctactcaagatgtcgtttgttaattttaag 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2063 tgattgttgccctattgttgaactctagagctactcaagatgtcgtttgttaattttaag 2122
Query: 326 gatctccaagaaaaacatgaggaaatcataatatagtgcactgaaataaagattttaata 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2123 gatctccaagaaaaacatgaggaaatcataatatagtgcactgaaataaagattttaata 2182
Query: 386 tgaatgcactcattgactctgtggtaagatcgataatgggaatccaatatatcgtttgtt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2183 tgaatgcactcattgactctgtggtaagatcgataatgggaatccaatatatcgtttgtt 2242
Query: 446 cgttttcagattcgtttgactctttcgtaccgttccttcatttttcatttactcatcctt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2243 cgttttcagattcgtttgactctttcgtaccgttccttcatttttcatttactcatcctt 2302
Query: 506 tttttattttattagatcaacttcgaatgtcatgcccgttagtttcttatgggaatacaa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2303 tttttattttattagatcaacttcgaatgtcatgcccgttagtttcttatgggaatacaa 2362
Query: 566 tctctgcaatctttcatagaatctctatttagagtagaacataaaaagcacttatctaat 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2363 tctctgcaatctttcatagaatctctatttagagtagaacataaaaagcacttatctaat 2422
Query: 626 ctagtgcagtctgtttataatattaaacacagtcaaaaatctaaagaaaaaaattataca 685
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 2423 ctagtgcagtctgtttataatattaaacacagtcaaaaatctaaagaataaaattataca 2482
Query: 686 gtttaaagtttacaaggttgagattaattatcgctgtattttcatccaaggaatttcacc 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 2483 gtttaaagtttacaaggttgagattaattatcgctgtattttcatccaaggaattccacc 2542
Query: 746 ctaggatgttacgttatattgaaatctatgttaattatgctacatgaaaagattgacata 805
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 2543 ctaggatgttacgttatattgaaatctatgttaattatgctacatg-aaagattgacata 2601
Query: 806 tttttataatttaaagggctcctttacatcttgaatgaaccagttcaacagat 858
|||||||||||||| | || | ||||||||||||||||| || |||||||||
Sbjct: 2602 -ttttataatttaaa-gtcttccttacatcttgaatgaacgag-tcaacagat 2651
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7969
Number of Sequences: 1807
Number of extensions: 7969
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 905
length of database: 10,358,551
effective HSP length: 16
effective length of query: 889
effective length of database: 10,329,639
effective search space: 9183049071
effective search space used: 9183049071
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)