BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC50ZG10RM1.SCF screened BAC_end
         (900 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1331                                                        1639   0.0  

>3x_Contig1331 
          Length = 5830

 Score = 1639 bits (827), Expect = 0.0
 Identities = 850/855 (99%), Gaps = 2/855 (0%)
 Strand = Plus / Plus

                                                                        
Query: 46   tgaggttggtagaagtctctaaagagtcattatacagcgaccgcaagaacccatatgaag 105
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1887 tgaggttggtagaagtctctaaagagtcattatacagcgaccgcaagaacccatatgaag 1946

                                                                        
Query: 106  atgaaaacccaacaaccagaatttacacaattatcaagaaaatggcgactgaaaatggta 165
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1947 atgaaaacccaacaaccagaatttacacaattatcaagaaaatggcgactgaaaatggta 2006

                                                                        
Query: 166  gatttaataaaagattaccgtatgatgctattgtaagaacgattagatcaagaggtttca 225
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2007 gatttaataaaagattaccgtatgatgctattgtaagaacgattagatcaagaggtttca 2066

                                                                        
Query: 226  ctatgctgcaactggtaagctgtatcaaagagtatgagtatcttaatgtttggcatcaaa 285
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2067 ctatgctgcaactggtaagctgtatcaaagagtatgagtatcttaatgtttggcatcaaa 2126

                                                                        
Query: 286  tagaagacggaaacaccttgctatttattgacgatattgatgatacaacggaagacaatt 345
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2127 tagaagacggaaacaccttgctatttattgacgatattgatgatacaacggaagacaatt 2186

                                                                        
Query: 346  ctgatataactaacccttcgacgcaaaggacaccggatgaagatgtcgatatggaataat 405
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2187 ctgatataactaacccttcgacgcaaaggacaccggatgaagatgtcgatatggaataat 2246

                                                                        
Query: 406  acctgactatctgcataccactaatctgttttgatccaataatgcctttattccttattt 465
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2247 acctgactatctgcataccactaatctgttttgatccaataatgcctttattccttattt 2306

                                                                        
Query: 466  tagttttaaacctagtttaacgacaaatttgtattactatatactaacgtttaagtaact 525
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2307 tagttttaaacctagtttaacgacaaatttgtattactatatactaacgtttaagtaact 2366

                                                                        
Query: 526  tctaatgtgcctcttctcccagatagactgaacgatgcagaagtaatcacagtctatctt 585
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2367 tctaatgtgcctcttctcccagatagactgaacgatgcagaagtaatcacagtctatctt 2426

                                                                        
Query: 586  tcaaaaccaaaattaatttgtcgaattcaaaatctatctattttgtgcataaacctagct 645
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2427 tcaaaaccaaaattaatttgtcgaattcaaaatctatctattttgtgcataaacctagct 2486

                                                                        
Query: 646  tatgccatctactacttagtctaaggtaagtttacatatttgtttacaacttctgaaacc 705
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2487 tatgccatctactacttagtctaaggtaagtttacatatttgtttacaacttctgaaacc 2546

                                                                        
Query: 706  tcagagagtagttcttgtttcctcttaggatcacaccatgagccttcaatactttgtctg 765
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2547 tcagagagtagttcttgtttcctcttaggatcacaccatgagccttcaatactttgtctg 2606

                                                                        
Query: 766  gcgatcttagcccaaactgctttagaccaaccaaatctggaatacacttccagatagttc 825
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2607 gcgatcttagcccaaactgctttagaccaaccaaatctggaatacacttccagatagttc 2666

                                                                        
Query: 826  tgtaagatgtacccttcaaaataagctggatcatcagaatttatgggagaaagg-acgtc 884
            ||||||||||||||| ||||||||||||||||||||||||| || ||||||||| |||||
Sbjct: 2667 tgtaagatgtaccctccaaaataagctggatcatcagaattaat-ggagaaaggaacgtc 2725

                           
Query: 885  gttattcaagaactc 899
            ||||| |||||||||
Sbjct: 2726 gttatccaagaactc 2740


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6697
Number of Sequences: 1807
Number of extensions: 6697
Number of successful extensions: 29
Number of sequences better than 1.0e-20: 1
length of query: 900
length of database: 10,358,551
effective HSP length: 16
effective length of query: 884
effective length of database: 10,329,639
effective search space: 9131400876
effective search space used: 9131400876
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)