BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZG11FM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig698 1477 0.0
>3x_Contig698
Length = 2551
Score = 1477 bits (745), Expect = 0.0
Identities = 814/829 (98%), Gaps = 6/829 (0%)
Strand = Plus / Plus
Query: 85 atgtttggtcttctcatgtatgcagatgcaggctaggatcaacaagcaatcgcgatccag 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34 atgtttggtcttctcatgtatgcagatgcaggctaggatcaacaagcaatcgcgatccag 93
Query: 145 gcacccgttacataccaatcgtcaattaaaaagcgagcgactaagtgataagttgtatgc 204
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 94 gcacccgttacataccaatcgtcaattaaacagcgagcgactaagtgataagttgtatgc 153
Query: 205 gtgatcccatttttttctattaaacttctgcgtattggcactttagaatcatattctgtt 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 gtgatcccatttttttctattaaacttctgcgtattggcactttagaatcatattctgtt 213
Query: 265 gaaaagggaagctgagataagttcagacgcatatacagttagataatggattccagtttc 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 gaaaagggaagctgagataagttcagacgcatatacagttagataatggattccagtttc 273
Query: 325 ggaacaaatgggttctatacacatactccatcgatgtggagtgatagtaggcgtaggaac 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ggaacaaatgggttctatacacatactccatcgatgtggagtgatagtaggcgtaggaac 333
Query: 385 gttggaaatagagataaagactcgtt-cagaggaggaataagcgatcgaagaaatgaaga 443
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 334 gttggaaatagagataaagactcgttacagaggaggaataagcgatcgaagaaatgaaga 393
Query: 444 gatcaacaaaccaaaagaagatccattttgtatatccggtttttccaattacacaggaaa 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 gatcaacaaaccaaaagaagatccattttgtatatccggtttttccaattacacaggaaa 453
Query: 504 atcgaagtcaagcactagtagagcaaagaatggcccagcgagtgaatcgattaaggagct 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 atcgaagtcaagcactagtagagcaaagaatggcccagcgagtgaatcgattaaggagct 513
Query: 564 acctttgatttctactgaagttctcgatgcagccagtcagagaagattagccttcgtcgt 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 acctttgatttctactgaagttctcgatgcagccagtcagagaagattagccttcgtcgt 573
Query: 624 tttttttatcattcaatgctacaaactatacgatctaatcctacttaagagtgggatacc 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 tttttttatcattcaatgctacaaactatacgatctaatcctacttaagagtgggatacc 633
Query: 684 attatctgggatttttctatcgaattcaaggttaaacttcatttcaaaatatttggtaat 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 attatctgggatttttctatcgaattcaaggttaaacttcatttcaaaatatttggtaat 693
Query: 744 agactctttgttcttttactgtctccccacgttcaaaatacccaaattaaagttc-aacc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 694 agactctttgttcttttactgtctccccacgttcaaaatacccaaattaaagttcaaacc 753
Query: 803 actgatagtgcttttgcagattattt-attcgcaaccctca-acttgttatttccagtga 860
|||||||||||||||||||||||||| || ||||||||||| ||| |||| ||||||||
Sbjct: 754 actgatagtgcttttgcagattatttcatccgcaaccctcacactgtttatctccagtga 813
Query: 861 acaaagtatcccatgggatccgcttct-ttgtcattat-gagacagtat 907
|||||||||||||| || ||||||| |||||||||| ||||||||||
Sbjct: 814 acaaagtatcccattggtatcgcttctattgtcattatggagacagtat 862
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6436
Number of Sequences: 1807
Number of extensions: 6436
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)