BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZG12FM1.SCF screened BAC_end
(982 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig969 174 2e-43
3x_Contig928 170 3e-42
>3x_Contig969
Length = 3546
Score = 174 bits (88), Expect = 2e-43
Identities = 139/148 (93%), Gaps = 6/148 (4%)
Strand = Plus / Minus
Query: 672 tctcttgtcacagatagcagaaacaccacaaacagtcaatcttgcagctcttgtttcgac 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 3510 tctcttgtcacagatagcagaaacaccacaaacagtcaatcttgcagctcttgttccgac 3451
Query: 732 caattcgggtaatttttctaatcaaactttctctcaacaacggtagttttcgatgtttaa 791
|||||||| ||| |||||||||| |||||||||||||||||||||| |||||||| || |
Sbjct: 3450 caattcggctaa-ttttctaatc-aactttctctcaacaacggtag-tttcgatg-ttca 3395
Query: 792 agttagtctttgaacaggatcgtcagtg 819
|||||||| ||||||| |||||||||||
Sbjct: 3394 agttagtc-ttgaaca-gatcgtcagtg 3369
>3x_Contig928
Length = 1948
Score = 170 bits (86), Expect = 3e-42
Identities = 144/154 (93%), Gaps = 7/154 (4%)
Strand = Plus / Minus
Query: 88 atagttttaaaataactagtgccatattatccaaactggacataagcataactaatatta 147
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 147 atagttttaaaataactagtgccatattatcc-aactggacataagcataactaatatta 89
Query: 148 ttaagatttaaatttgaaatatattcatatttgtacattaacacataagttagtttacat 207
|| |||||| | ||||||||||| || |||||||||| ||||||||||||||| ||||||
Sbjct: 88 ttcagattt-actttgaaatata-tcctatttgtaca-taacacataagttag-ttacat 33
Query: 208 ttgcgaagaacaatctgttccggcctacatatat 241
||||| ||||||||||||||||||| ||||||||
Sbjct: 32 ttgcg-agaacaatctgttccggcc-acatatat 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7953
Number of Sequences: 1807
Number of extensions: 7953
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 2
length of query: 982
length of database: 10,358,551
effective HSP length: 16
effective length of query: 966
effective length of database: 10,329,639
effective search space: 9978431274
effective search space used: 9978431274
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)