BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZG12RM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig668 1437 0.0
>3x_Contig668
Length = 3128
Score = 1437 bits (725), Expect = 0.0
Identities = 810/829 (97%), Gaps = 7/829 (0%)
Strand = Plus / Plus
Query: 45 gctttctcattaagcaagcgttgtctgatttgaaagtatttcgtaaaaccttagaaaagg 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gctttctcattaagcaagcgttgtctgatttgaaagtatttcgtaaaaccttagaaaagg 443
Query: 105 ttgaaattcaacaatatttaacaggttctctgtaaatgaaaacccaatctccgatagtgg 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttgaaattcaacaatatttaacaggttctctgtaaatgaaaacccaatctccgatagtgg 503
Query: 165 tgcccagaacatccgttggatttcagagtagattcgattgtataaacttccggttatcat 224
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 504 tgcccagaacatccgttggatttcagagtagattcgattgtataaacttccggtta-cat 562
Query: 225 agtgcatgttagagtctgtgttgggccgtatactccctgattcactgaccttattgttcg 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 agtgcatgttagagtctgtgttgggccgtatactccctgattcactgaccttattgttcg 622
Query: 285 aaaacttacacatcttacagcagcctcggtgtagatttaaggctcgactatatctattga 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aaaacttacacatcttacagcagcctcggtgtagatttaaggctcgactatatctattga 682
Query: 345 aatctactacttacttcaattaagccgagagagagagagaacttgctttggtttctttga 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 aatctactacttacttcaattaagccgagagagagagagaacttgctttggtttctttga 742
Query: 405 ctgtttgatccactatagtgagtattattgttttattttataatatcaagtgctctgtag 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ctgtttgatccactatagtgagtattattgttttattttataatatcaagtgctctgtag 802
Query: 465 ttcaaggttattcgtcatgagcgcactggtacggcactcaccgttgatagggttggggtt 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 ttcaaggttattcgtcatgagcgcactggtacggcactcaccgttgatagggttggggtt 862
Query: 525 ccttcaaagcaccgtttaccctaaaaaggtcacgtgttatttttcgacttgcatgtggaa 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 ccttcaaagcaccgtttaccctaaaaaggtcacgtgttatttttcgacttgcatgtggaa 922
Query: 585 atgtcattcgagcattggaaaagttattggtataagaacgacgtcgatgaggacaacggt 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 923 atgtcattcgagcattggaaaagttattggtataagaacgacgtcgatgaggacaacggt 982
Query: 645 accaacgagaaggatctgttcaagcggtagattgttgttacagtttggttctcgagcaag 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 983 accaacgagaaggatctgttcaagcggtagattgttgttacagtttggttctcgagcaag 1042
Query: 705 acagaagcaggaagatctagactaccagcaagcaatactacgttgaaacatggcacaaca 764
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 1043 acagaagcaggaagatctagactaccagcaagcaata-tacgtagaaacatggcacaaca 1101
Query: 765 tccctagggttatttgtctttggtattcatttattggaaatccaagttgacgtttacaga 824
| |||| ||||||||||| |||||| || |||||||| ||||||||||||| |||||||
Sbjct: 1102 t-cctaaggttatttgtc-ttggtaatccattattggatatccaagttgacg-ttacaga 1158
Query: 825 gtccta-ttgggaaaatacgggtttgaaaagcaacaacccattcttggt 872
|||||| |||| ||| ||| |||||||| |||||| || || |||||||
Sbjct: 1159 gtcctatttggcaaagtac-ggtttgaagagcaacgacgcaatcttggt 1206
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7214
Number of Sequences: 1807
Number of extensions: 7214
Number of successful extensions: 68
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)