BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZH01FM1.SCF screened BAC_end
(977 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1423 1191 0.0
>3x_Contig1423
Length = 8454
Score = 1191 bits (601), Expect = 0.0
Identities = 623/629 (99%), Gaps = 1/629 (0%)
Strand = Plus / Minus
Query: 87 gacttcccacaagtttggagtcaagaaaccgtatgtgttaccgatggcaacgaaagcggc 146
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 5503 gacttcccacaagtttggagtcaagaaaccgtaggtgttaccgatggcaacgaaagcggc 5444
Query: 147 cttcaaagtgttttccaaagttctggtggaaccagtagaagaggtgtagacatcttcaac 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5443 cttcaaagtgttttccaaagttctggtggaaccagtagaagaggtgtagacatcttcaac 5384
Query: 207 accagccaattgcatcaacttcttgacagctggggaggcgacgataccggaacctcttgg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5383 accagccaattgcatcaacttcttgacagctggggaggcgacgataccggaacctcttgg 5324
Query: 267 agctggaatcaatctaacggaaacggaaccacacttaccagaggtcttggtagccaagga 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5323 agctggaatcaatctaacggaaacggaaccacacttaccagaggtcttggtagccaagga 5264
Query: 327 gtgaggttgacccaagttggtaccccagtaacctcttctgattgggataacggacaactt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5263 gtgaggttgacccaagttggtaccccagtaacctcttctgattgggataacggacaactt 5204
Query: 387 ggcgatgatgataccggctctgatggcaccagcaacttccttagcggtcttaatacccaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5203 ggcgatgatgataccggctctgatggcaccagcaacttccttagcggtcttaatacccaa 5144
Query: 447 accgacgtgaccgttggagtcaccaacgacgacgacagccttgaatctggttctttgacc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5143 accgacgtgaccgttggagtcaccaacgacgacgacagccttgaatctggttctttgacc 5084
Query: 507 agctctggtttgcttttggacaggcttgatgttcataacttcatccttcaagtttggcaa 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5083 agctctggtttgcttttggacaggcttgatgttcataacttcatccttcaagtttggcaa 5024
Query: 567 caattggtcaatgatttggaattccttgactggcaaagagtgcaagaagatttcttcgat 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5023 caattggtcaatgatttggaattccttgactggcaaagagtgcaagaagatttcttcgat 4964
Query: 627 ggaagagatcttgccggcctttaccaatctacccaacttggtaactggaacccaaccctt 686
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 4963 ggaagagatcttgccggccttcaccaatctacccaacttggtaactggaacccaaccctt 4904
Query: 687 ttcttttttggtcttttttaccacctctt 715
||| || ||||||| || |||||||||||
Sbjct: 4903 ttc-ttcttggtctcttctaccacctctt 4876
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6973
Number of Sequences: 1807
Number of extensions: 6973
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 977
length of database: 10,358,551
effective HSP length: 16
effective length of query: 961
effective length of database: 10,329,639
effective search space: 9926783079
effective search space used: 9926783079
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)