BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZH03RM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1652 1582 0.0
>3x_Contig1652
Length = 14842
Score = 1582 bits (798), Expect = 0.0
Identities = 851/866 (98%), Gaps = 2/866 (0%)
Strand = Plus / Minus
Query: 49 aacggatctcgataattgtttcattgtctaacttgtgtagagagcaagttattgaaaaag 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4823 aacggatctcgataattgtttcattgtctaacttgtgtagagagcaagttattgaaaaag 4764
Query: 109 tttaggagagaccgaaaagaggaaatatttaacaatgctttctagtataagaccgggtac 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4763 tttaggagagaccgaaaagaggaaatatttaacaatgctttctagtataagaccgggtac 4704
Query: 169 cgtggttctatctcgtactttcaagcagagcttggctagctataggggtgttactgctgt 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4703 cgtggttctatctcgtactttcaagcagagcttggctagctataggggtgttactgctgt 4644
Query: 229 tagtttgtattctacaaataattctgcacaaaagtccgattcaaccaaagaaaccacatc 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4643 tagtttgtattctacaaataattctgcacaaaagtccgattcaaccaaagaaaccacatc 4584
Query: 289 cactgaaaagggcaaaagcgttgcaccagaagacgttagaactaagagacgtgaattatc 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4583 cactgaaaagggcaaaagcgttgcaccagaagacgttagaactaagagacgtgaattatc 4524
Query: 349 cagttccaagtacgaatctgcatcatatcaacttccaaaatggaaagaagctcttggtga 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4523 cagttccaagtacgaatctgcatcatatcaacttccaaaatggaaagaagctcttggtga 4464
Query: 409 atttgttattagtacgcttaatttggatatggataaagttagagccggtccaattgctgg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4463 atttgttattagtacgcttaatttggatatggataaagttagagccggtccaattgctgg 4404
Query: 469 ttcatactattactcgatctgtaaagaacaaggtcttcaatatgaggatgaaccactttc 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4403 ttcatactattactcgatctgtaaagaacaaggtcttcaatatgaggatgaaccactttc 4344
Query: 529 taagacagccaagttcttttacgaggatttgaagttgccaaagacattctcccaatggta 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4343 taagacagccaagttcttttacgaggatttgaagttgccaaagacattctcccaatggta 4284
Query: 589 ccaaattactatcctacatgaatggatgttattcgtgagaatgagagctatgccgttcaa 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4283 ccaaattactatcctacatgaatggatgttattcgtgagaatgagagctatgccgttcaa 4224
Query: 649 atacggcaagaattatcagcagaagttggtggatagaacatttgccgatatcgaaaagag 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4223 atacggcaagaattatcagcagaagttggtggatagaacatttgccgatatcgaaaagag 4164
Query: 709 attgtatgacgaaatgaacgtacattccggtagaataacagatcaatatctaaaagattt 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4163 attgtatgacgaaatgaacgtacattccggtagaataacagatcaatatctaaaagattt 4104
Query: 769 caattctcaactttccggtgctgtatttgcttacgatggaagtttcttctccggagatgc 828
||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 4103 caattctcaacttcgcggtgctgtatttgcttacgatgaaggtttcttctccggagatgc 4044
Query: 829 cgcttttgcgtcagctatctgggaaaatttgttcggtgggtaaaaaaatatcgaatatgt 888
|||| ||||||||||||||||| ||||||||||||||| | |||||||| | |||||
Sbjct: 4043 cgctcttgcgtcagctatctggagaaatttgttcggtggtaagaaaaatattg-atatgg 3985
Query: 889 tgcccttgggaagccatggtaagata 914
||| ||| ||||||||||||||||||
Sbjct: 3984 tgcactt-ggaagccatggtaagata 3960
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7080
Number of Sequences: 1807
Number of extensions: 7080
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)