BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZH04FM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig914 803 0.0
3x_Contig226 630 e-180
>3x_Contig914
Length = 2833
Score = 803 bits (405), Expect = 0.0
Identities = 508/536 (94%), Gaps = 5/536 (0%)
Strand = Plus / Plus
Query: 375 ccgtttatattatgtattatgtttcgtatcttctttccaatctcctattctttatctggg 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 ccgtttatattatgtattatgtttcgtatcttctttccaatctcctattctttatctggg 73
Query: 435 gatctggagtttataaatgaatcaaattaaagaacgaaaaaacacagacggtttaaccaa 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 gatctggagtttataaatgaatcaaattaaagaacgaaaaaacacagacggtttaaccaa 133
Query: 495 aaaatcctttaatatcaaacaaaaagggcgaagaaaaaaaaactcgatagttgacagaat 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 aaaatcctttaatatcaaacaaaaagggcgaagaaaaaaaaactcgatagttgacagaat 193
Query: 555 atggtgctataaagtatcgatgcaattcctgaagcaggttttaagcttggaatgaattgg 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 atggtgctataaagtatcgatgcaattcctgaagcaggttttaagcttggaatgaattgg 253
Query: 615 cgtaggtccagcaataatcttgtaatgtcttgtattttgtaacgacgcagattacantac 674
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 254 cgtaggtccagcaataatcttgtaatgtcttgtattttgtaacgacgcagattacaatac 313
Query: 675 atatatatatatatatatgtatatgactggtagagacagaaatgtgatcatatggaatag 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 atatatatatatatatatgtatatgactggtagagacagaaatgtgatcatatggaatag 373
Query: 735 cttattagaaccag-aatattcccgattggtagtgtgagatactggcttttgtgtgggtt 793
| ||| ||||| || ||||| | ||||||||||||||||||||||| ||||||| ||||
Sbjct: 374 catataagaacaagaaatatacaggattggtagtgtgagatactggc-tttgtgt-ggtt 431
Query: 794 tgatcgaagtgaaaaatttccaatgctcccttctgtttgggcacatttttggtgcgcctt 853
|||||||||||||||||| |||||||| || |||||||||||||| | || ||||||||
Sbjct: 432 tgatcgaagtgaaaaattcccaatgctaccatctgtttgggcaca-tcttcgtgcgcctc 490
Query: 854 attttagggcgattggaccgaaattcattggaaacaggcttgaaggcctgatttct 909
||| ||||||| ||||| || ||||| | || ||||| |||| |||||||||||
Sbjct: 491 attctagggcggatggacgaaatttcatcgaaatcaggc-tgaaagcctgatttct 545
>3x_Contig226
Length = 1863
Score = 630 bits (318), Expect = e-180
Identities = 318/318 (100%)
Strand = Plus / Minus
Query: 89 ccttgacgaccaagttcttaccacccaattccttggcaatcttggtagcctcatcgacgg 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ccttgacgaccaagttcttaccacccaattccttggcaatcttggtagcctcatcgacgg 263
Query: 149 tatgagcagctgcaccttttggagtaccaacgccgtattgtctcaacagttcagccgaac 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tatgagcagctgcaccttttggagtaccaacgccgtattgtctcaacagttcagccgaac 203
Query: 209 ggtattcgtggatggacaagtttctaacttgttgacgaacaacagaagaagacttgtgca 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggtattcgtggatggacaagtttctaacttgttgacgaacaacagaagaagacttgtgca 143
Query: 269 aacagcttcttaatttgtaagcttgcgacaacatagtgtatgataattctatagtagttc 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 aacagcttcttaatttgtaagcttgcgacaacatagtgtatgataattctatagtagttc 83
Query: 329 acggagtgagagaagacagtttcgttaagccaaaaaaaaaaagacaccgtttatattatg 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82 acggagtgagagaagacagtttcgttaagccaaaaaaaaaaagacaccgtttatattatg 23
Query: 389 tattatgtttcgtatctt 406
||||||||||||||||||
Sbjct: 22 tattatgtttcgtatctt 5
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,329
Number of Sequences: 1807
Number of extensions: 17329
Number of successful extensions: 1885
Number of sequences better than 1.0e-20: 2
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)