BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZH04RM1.SCF screened BAC_end
(904 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1763 1665 0.0
>3x_Contig1763
Length = 22654
Score = 1665 bits (840), Expect = 0.0
Identities = 857/860 (99%), Gaps = 2/860 (0%)
Strand = Plus / Minus
Query: 47 tgtagaacgctagttgcgtctctagatctagaagactgggactcattctgagacttggta 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9746 tgtagaacgctagttgcgtctctagatctagaagactgggactcattctgagacttggta 9687
Query: 107 gcgcaaaaccgtaacacggatgctttgcttgtgttttttgatgttgctgttttttttctt 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9686 gcgcaaaaccgtaacacggatgctttgcttgtgttttttgatgttgctgttttttttctt 9627
Query: 167 attgattgcattatctcagttgtcttccccttccttaatatttcatttcaattttaactc 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9626 attgattgcattatctcagttgtcttccccttccttaatatttcatttcaattttaactc 9567
Query: 227 taatttcaacttttaaataattttggtggcaaacacatcaacgcactacagttaccttta 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9566 taatttcaacttttaaataattttggtggcaaacacatcaacgcactacagttaccttta 9507
Query: 287 ccaagatatacgaagaacctggcaactcattgatcttcctgtaactactgaatctcaatc 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9506 ccaagatatacgaagaacctggcaactcattgatcttcctgtaactactgaatctcaatc 9447
Query: 347 gtcaattgggaatccctataaccacatatcctatgtctgctgcaggttacgatcgtcaca 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9446 gtcaattgggaatccctataaccacatatcctatgtctgctgcaggttacgatcgtcaca 9387
Query: 407 ttactattttctctccagaaggtcgtctttaccaagtcgagtatgccttcaaagcggcca 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9386 ttactattttctctccagaaggtcgtctttaccaagtcgagtatgccttcaaagcggcca 9327
Query: 467 atcaacctaatctaaactcaatagccatcaggtccaagaccgcctctgtggtaattagcc 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9326 atcaacctaatctaaactcaatagccatcaggtccaagaccgcctctgtggtaattagcc 9267
Query: 527 agaagaaagtcccagataagcttttagatcctaagacggttagctatattttcccagtgg 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9266 agaagaaagtcccagataagcttttagatcctaagacggttagctatattttcccagtgg 9207
Query: 587 caagacatatcgggttctgtgccacaggaccggttccagatgccagaaatattgcattga 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9206 caagacatatcgggttctgtgccacaggaccggttccagatgccagaaatattgcattga 9147
Query: 647 gatgtaaagccgaagctagtgagtttcgttataaatatgggtatgatatcccatgctccg 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9146 gatgtaaagccgaagctagtgagtttcgttataaatatgggtatgatatcccatgctccg 9087
Query: 707 tactagctaaaagaatggccaatttgtcgcaaatatacacacaaagagcttacatgagac 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9086 tactagctaaaagaatggccaatttgtcgcaaatatacacacaaagagcttacatgagac 9027
Query: 767 cattagggattattttgacttttatttcgtacgatgaggaaacaggacctgctatttt-a 825
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 9026 cattagggattattttgacttttatttcgtacgatgaggaaacaggacctgctattttca 8967
Query: 826 aatgtgaccctgctggttactatacggggtac-aggctactgccactggccccaaacagc 884
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 8966 aatgtgaccctgctggttactatacggggtacaaggctactgccactggcccaaaacagc 8907
Query: 885 aggagttgaactctgctttg 904
||||||||||||||||||||
Sbjct: 8906 aggagttgaactctgctttg 8887
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5938
Number of Sequences: 1807
Number of extensions: 5938
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 904
length of database: 10,358,551
effective HSP length: 16
effective length of query: 888
effective length of database: 10,329,639
effective search space: 9172719432
effective search space used: 9172719432
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)