BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZH05RM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1397 1669 0.0
>3x_Contig1397
Length = 8011
Score = 1669 bits (842), Expect = 0.0
Identities = 863/870 (99%), Gaps = 1/870 (0%)
Strand = Plus / Plus
Query: 52 ctctcaaaataattctttacaaaatttgaatttgcaaagtgacgctcttcaatgaggtgg 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3499 ctctcaaaataattctttacaaaatttgaatttgcaaagtgacgctcttcaatgaggtgg 3558
Query: 112 gaacacgtcctatgataaaatccgtcaacaaaaatgttcgatagaattaatagctgaaat 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3559 gaacacgtcctatgataaaatccgtcaacaaaaatgttcgatagaattaatagctgaaat 3618
Query: 172 tgtttctttaactccttcactctctaaactaagtagcaaaaactaggagaaaaagatcca 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3619 tgtttctttaactccttcactctctaaactaagtagcaaaaactaggagaaaaagatcca 3678
Query: 232 aagacacgcagcggctttccaaaagaaaactaggacagataaaacaggattatctaaccg 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3679 aagacacgcagcggctttccaaaagaaaactaggacagataaaacaggattatctaaccg 3738
Query: 292 aaaaccaacacagatccaactgaactgaatcaagtacaggaaatccgaagaatattctgt 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3739 aaaaccaacacagatccaactgaactgaatcaagtacaggaaatccgaagaatattctgt 3798
Query: 352 atttcaaatcaaataaaaccaactcacaaacaccgtttattaaacaagtgatggatggtg 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3799 atttcaaatcaaataaaaccaactcacaaacaccgtttattaaacaagtgatggatggtg 3858
Query: 412 gattaaaaaaaaaagaaaaaaagatgagggaaaagaggatgatatatggttcggcctggt 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3859 gattaaaaaaaaaagaaaaaaagatgagggaaaagaggatgatatatggttcggcctggt 3918
Query: 472 gaatgtaatacttccccgagtcctaataatatatcccttgagtgatgaagaactttgtcc 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3919 gaatgtaatacttccccgagtcctaataatatatcccttgagtgatgaagaactttgtcc 3978
Query: 532 gttgaccttctgaaaacctcatcaaaaagatacctaactgtacgtacacaaaataacaag 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3979 gttgaccttctgaaaacctcatcaaaaagatacctaactgtacgtacacaaaataacaag 4038
Query: 592 catttaaactatataggttgaaatttatatatttttctcttggttttttttctttcattt 651
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 4039 catttaaactatataggttgaaatttatatatttttctcttgtttttttttctttcattt 4098
Query: 652 tgacaaatcgaagaaaaagaaaaagaacttcgttctaaagtggaaacttaatgagctnta 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 4099 tgacaaatcgaagaaaaagaaaaagaacttcgttctaaagtggaaacttaatgagcttta 4158
Query: 712 agttagttcagctgaaatatactgactgacattcagaaaaactgaaattgttctagttac 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4159 agttagttcagctgaaatatactgactgacattcagaaaaactgaaattgttctagttac 4218
Query: 772 aaagacacgaagtanggaaaaaggaaaaagaagcgaaaaattataagattgtgaggtctg 831
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4219 aaagacacgaagtagggaaaaaggaaaaagaagcgaaaaattataagattgtgaggtctg 4278
Query: 832 aaaactggaaaattcgaatcaataccggnttgaatgaatcatgatccagaaagaatacag 891
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 4279 aaaactgg-aaattcgaatcaataccgggttgaatgaatcatgatccagaaagaatacag 4337
Query: 892 caaacgnagaaaatttttttctgtgtcagc 921
||||| |||||||||||||||||||||||
Sbjct: 4338 caaacagagaaaatttttttctgtgtcagc 4367
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,223
Number of Sequences: 1807
Number of extensions: 12223
Number of successful extensions: 233
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)