BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZH06RM1.SCF screened BAC_end
(966 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig484 1302 0.0
>3x_Contig484
Length = 1849
Score = 1302 bits (657), Expect = 0.0
Identities = 768/797 (96%), Gaps = 6/797 (0%)
Strand = Plus / Plus
Query: 45 gcttcaacaacccattgaacgtgaaagattgcttaatactaccttgtggcatttgtctag 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 gcttcaacaacccattgaacgtgaaagattgcttaatactaccttgtggcatttgtctag 956
Query: 105 ggggacccttaacaaaatattcggaatgtcctggcaacatataaaaaccatcttcaaact 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 957 ggggacccttaacaaaatattcggaatgtcctggcaacatataaaaaccatcttcaaact 1016
Query: 165 caaatattggtatgttaaacagtgaaaactcaagaattcccatatttggatccaacctga 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1017 caaatattggtatgttaaacagtgaaaactcaagaattcccatatttggatccaacctga 1076
Query: 225 gatctattttccctcctacccatgttagcttcctcaatggcaccttataatgacacagtt 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1077 gatctattttccctcctacccatgttagcttcctcaatggcaccttataatgacacagtt 1136
Query: 285 caacccattgatctctcaattctgactctacagtttccttaggatatttgccaactatct 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1137 caacccattgatctctcaattctgactctacagtttccttaggatatttgccaactatct 1196
Query: 345 tgatacccatactggtatcgctacaaggtatttcattgatttcttcatactcaagcaaac 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1197 tgatacccatactggtatcgctacaaggtatttcattgatttcttcatactcaagcaaac 1256
Query: 405 tactacggccttcctgaatttctgtaatatatatcagcttgtttttactatcctctataa 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1257 tactacggccttcctgaatttctgtaatatatatcagcttgtttttactatcctctataa 1316
Query: 465 caacaaagcaggggaagatcctaaagcacacttccgcatctttacgattcgataaagaca 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1317 caacaaagcaggggaagatcctaaagcacacttccgcatctttacgattcgataaagaca 1376
Query: 525 agtttgcaacagaaacggattttaaatgccgtactcttttctaaattgatgataatagca 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1377 agtttgcaacagaaacggattttaaatgccgtactcttttctaaattgatgataatagca 1436
Query: 585 cagaattcccaatacaggatcaccaagcctactcgccaggttgcatgcatcacggttatt 644
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1437 cagaattcccaatacaggatcaccaagcctactcgccaggttgcatgcatcacgtttatt 1496
Query: 645 aatataagttagtaaataagggttcacctcagctgtcacataggattaagataaaaatgc 704
||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||
Sbjct: 1497 aatataagttagtaaataaggtttcacctcagctgtcacatagta-taagataaaaatgc 1555
Query: 705 atacatgttaacccttagaattcaatcttccccaagtttccaggttttatatttttccca 764
|||||||| |||||| || |||||||| ||| |||| |||||| | | ||| ||||| ||
Sbjct: 1556 atacatgtaaaccctcag-attcaatcatccacaag-ttccagttataata-ttttcgca 1612
Query: 765 gttttgatcccttccaccggattgaacttgccgggaaggaacccaaaccgggttggcagg 824
| | |||| || |||| | |||||||| |||| ||||||||||||| ||| ||||||||
Sbjct: 1613 g-tatgataccatccaactgattgaac-tgcctggaaggaacccaagccgtgttggcagt 1670
Query: 825 tatccaatcaaaccttg 841
| |||||||||||||
Sbjct: 1671 cacgcaatcaaaccttg 1687
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7393
Number of Sequences: 1807
Number of extensions: 7393
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 966
length of database: 10,358,551
effective HSP length: 16
effective length of query: 950
effective length of database: 10,329,639
effective search space: 9813157050
effective search space used: 9813157050
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)