BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZH07FM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1359 1146 0.0
>3x_Contig1359
Length = 7536
Score = 1146 bits (578), Expect = 0.0
Identities = 606/614 (98%), Gaps = 1/614 (0%)
Strand = Plus / Plus
Query: 86 ctgttttgtgattttagaggacgagtttttatatcttcataaaaatggtatttgcaataa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ctgttttgtgattttagaggacgagtttttatatcttcataaaaatggtatttgcaataa 382
Query: 146 gccacaatttcactatgaagcagataattcagaggaagagttcgcggtgttttacaacaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gccacaatttcactatgaagcagataattcagaggaagagttcgcggtgttttacaacaa 442
Query: 206 ctgggatggattgcagttaccagaaacgagattcggagaccagttcaccagtaaatatag 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ctgggatggattgcagttaccagaaacgagattcggagaccagttcaccagtaaatatag 502
Query: 266 ttttttgaaatgggttgacgtattctatggtaccctgggtgggcatatgttctccgggac 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ttttttgaaatgggttgacgtattctatggtaccctgggtgggcatatgttctccgggac 562
Query: 326 tgctgttccctttggtatgtgtaagatgggtgtagatgtgatcaattcgaaaaagggcga 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tgctgttccctttggtatgtgtaagatgggtgtagatgtgatcaattcgaaaaagggcga 622
Query: 386 cgcgtactctgggtttcaacccgatggtgaggttgttggagtttcgttattgcatgaatc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 cgcgtactctgggtttcaacccgatggtgaggttgttggagtttcgttattgcatgaatc 682
Query: 446 tggtaccggtggtgctcccacttatggggttgtttcgcagcttccaatgatagcttcgag 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tggtaccggtggtgctcccacttatggggttgtttcgcagcttccaatgatagcttcgag 742
Query: 506 tgcaagttcagttgatgtaacgaggcaaatttctttcaagaggaaatcgcctgacgttgc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tgcaagttcagttgatgtaacgaggcaaatttctttcaagaggaaatcgcctgacgttgc 802
Query: 566 gcacattggctattataaagtagaactcgataacggtgttgatatagaattttcatctaa 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 gcacattggctattataaagtagaactcgataacggtgttgatatagaattttcatctaa 862
Query: 626 ggataggtcttggtttgattgaatatacttttcccgaactgaaagacaccgggaaaccaa 685
||||||||| ||| ||| |||||||||||| |||||||||||||||| |||||||||||
Sbjct: 863 ggataggtc-tgggttgtatgaatatactttccccgaactgaaagacaacgggaaaccaa 921
Query: 686 ttattatggggaac 699
|||| |||| ||||
Sbjct: 922 ttatcatggtgaac 935
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6997
Number of Sequences: 1807
Number of extensions: 6997
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)