BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZH08FM1.SCF screened BAC_end
(909 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1283 1289 0.0
>3x_Contig1283
Length = 6261
Score = 1289 bits (650), Expect = 0.0
Identities = 702/714 (98%), Gaps = 4/714 (0%)
Strand = Plus / Minus
Query: 86 taccagagtgtctaccgaagacaccatgcaaatttggaccgaccttgtgtggaccaccgg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4272 taccagagtgtctaccgaagacaccatgcaaatttggaccgaccttgtgtggaccaccgg 4213
Query: 146 cttcaacggtgtgacattgcaaacatctggtcttgaacaaagtagcacccttcttttcgg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4212 cttcaacggtgtgacattgcaaacatctggtcttgaacaaagtagcacccttcttttcgg 4153
Query: 206 aacccttcttgtatggagctggcattatgactttatattagttgtgttggttgtgtaaca 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4152 aacccttcttgtatggagctggcattatgactttatattagttgtgttggttgtgtaaca 4093
Query: 266 gttatttgatttgacgaatcaatccttaatactgatagtttgggaaactttaattaagat 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4092 gttatttgatttgacgaatcaatccttaatactgatagtttgggaaactttaattaagat 4033
Query: 326 agaaaggagaaaaaagaaaacgctaaaaagacttgctaaagaaacatcaaattcaatcga 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4032 agaaaggagaaaaaagaaaacgctaaaaagacttgctaaagaaacatcaaattcaatcga 3973
Query: 386 atatcaaatcttaatatgttagttatatatgaaattatcaacaaaccatagtgcgcatac 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3972 atatcaaatcttaatatgttagttatatatgaaattatcaacaaaccatagtgcgcatac 3913
Query: 446 taaaatttttctcctacctgtttttaactacttaaaccgaaaaaatgcttcgaaacaagt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3912 taaaatttttctcctacctgtttttaactacttaaaccgaaaaaatgcttcgaaacaagt 3853
Query: 506 ctatcatttcgggaacatcggtcaagacacgagatgagccaaattctgtgaagcctctga 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3852 ctatcatttcgggaacatcggtcaagacacgagatgagccaaattctgtgaagcctctga 3793
Query: 566 gacttttttctcattggtttccccgttgtgcgttttgctgcagggtaatcttaatgggga 625
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 3792 gacttttttctcattggttt-cccgttgtgcgttttgctgcagggtaatcttaatgggga 3734
Query: 626 ttaaagcgtggggaaaagc-attcttgtcaga-gttggacgttactgtgaacggaagcga 683
||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||
Sbjct: 3733 ttaaagcgtggggaaaagcaattcttgtcagaggttggacgtcactgtgaacggaagcga 3674
Query: 684 tctgattggttggctgatgtatgttacaatcacgtgatacgtactgaccggcacgtgaca 743
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 3673 tctgattggttggctgatgtatgttacagtcacgtgatacgtactgaccggcacgtgaca 3614
Query: 744 attaacttaatggtaa-gggtctgggatttttctgatcaatgttcccctgagaa 796
|||||||||||||||| || ||||| || | |||||||| |||| |||||||||
Sbjct: 3613 attaacttaatggtaatggttctggaatatctctgatcagtgttaccctgagaa 3560
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6570
Number of Sequences: 1807
Number of extensions: 6570
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)