BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZH08RM1.SCF screened BAC_end
(898 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1400 912 0.0
>3x_Contig1400
Length = 8536
Score = 912 bits (460), Expect = 0.0
Identities = 624/662 (94%), Gaps = 15/662 (2%)
Strand = Plus / Minus
Query: 229 cctcaattgatcattgctactcatatctcgtttgcactattgctttgcgtgttgggatcg 288
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 8536 cctcaattgatcattgctactcatatctcgtttgcactaatgctttgcgtgttgggatcg 8477
Query: 289 cagatctatttaaccaaaaatatccatttcatcgcattaacgattatcgccactctacta 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8476 cagatctatttaaccaaaaatatccatttcatcgcattaacgattatcgccactctacta 8417
Query: 349 tggatcaccgtgacgtggttcatctacgaattacaaaacacaaagcttgttaccaacgaa 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8416 tggatcaccgtgacgtggttcatctacgaattacaaaacacaaagcttgttaccaacgaa 8357
Query: 409 gatctacaaacagctgaatctaaaaagactgataagactgagccttccaagccctctgaa 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8356 gatctacaaacagctgaatctaaaaagactgataagactgagccttccaagccctctgaa 8297
Query: 469 gagataaatctagagggtgttgcgaaacctgatcctaaaccatcatctacacctaaaaaa 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8296 gagataaatctagagggtgttgcgaaacctgatcctaaaccatcatctacacctaaaaaa 8237
Query: 529 aggaaaacanaatcaagaagagcttaagctggtgataaaccattctctcacctgagcaac 588
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8236 aggaaaacaaaatcaagaagagcttaagctggtgataaaccattctctcacctgagcaac 8177
Query: 589 tttctgattagactacattggacagttagtaaaatcatttttaaaacgca--taccactg 646
|||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||
Sbjct: 8176 tttctgattagactacattggacagtaagtaaaatcattttt-aaacgcaataaccactg 8118
Query: 647 catagacttgtaacattttgggaaccattataaannttatttc-aattcaaaaggtgcag 705
||||||||||||||| ||||||||||| |||||| ||| ||| ||| |||| | |||||
Sbjct: 8117 catagacttgtaaca-tttgggaacca-tataaaatttaattcaaatacaaaggttgcag 8060
Query: 706 aagccattatttcgtcagattactacgatctattatttac-acgttgtgt-aaggcacat 763
|||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||
Sbjct: 8059 aagccattatttcgtcagattactacgatctattatatacaacgttgtgtaaaggcacat 8000
Query: 764 cct-aataactggctt-cgtttncttttt-actcttcgntattg-ttcatgc-ttatcca 818
||| |||| ||| ||| ||||| |||||| |||||||| ||||| ||||||| | |||||
Sbjct: 7999 cctaaatagctgccttccgtttcctttttcactcttcgttattgtttcatgcataatcca 7940
Query: 819 tac-tttcatgttccctcggaacttcattggc-tttaaaattcgttttgggaaaaaaaaa 876
||| |||||||||| ||||||||||| |||| || | | ||||||||| ||||||||||
Sbjct: 7939 tacatttcatgttcgctcggaacttctatggcattcagatttcgttttgagaaaaaaaaa 7880
Query: 877 aa 878
||
Sbjct: 7879 aa 7878
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,206
Number of Sequences: 1807
Number of extensions: 11206
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 898
length of database: 10,358,551
effective HSP length: 16
effective length of query: 882
effective length of database: 10,329,639
effective search space: 9110741598
effective search space used: 9110741598
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)