BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZH09FM1.SCF screened BAC_end
(966 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1774 1271 0.0
>3x_Contig1774
Length = 27771
Score = 1271 bits (641), Expect = 0.0
Identities = 677/685 (98%), Gaps = 3/685 (0%)
Strand = Plus / Minus
Query: 86 tggtgccaatgggacgaatggcaagcgacctttgaattatagccaaacgtcattcaagga 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5739 tggtgccaatgggacgaatggcaagcgacctttgaattatagccaaacgtcattcaagga 5680
Query: 146 tccatctttgtcctcattagcaaaatcgaattccaatccatttgcgccatctccaggcca 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5679 tccatctttgtcctcattagcaaaatcgaattccaatccatttgcgccatctccaggcca 5620
Query: 206 gactactccaagcacaatttccaacgtgggtacatctaacggaccaaacactaattctcc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5619 gactactccaagcacaatttccaacgtgggtacatctaacggaccaaacactaattctcc 5560
Query: 266 agtgccaataaaaccactgagtccaagttctacatccgcgacagatcacgatttgaaaaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5559 agtgccaataaaaccactgagtccaagttctacatccgcgacagatcacgatttgaaaaa 5500
Query: 326 cagtaaaggattccaaggatatttactaaaaaagaagagaaagaagctacaaggttttac 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5499 cagtaaaggattccaaggatatttactaaaaaagaagagaaagaagctacaaggttttac 5440
Query: 386 caaacggttctttaaactcgatataaaatttgggattctctcatattatctcaactctaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5439 caaacggttctttaaactcgatataaaatttgggattctctcatattatctcaactctaa 5380
Query: 446 atctcctgtgtgtcgtggtgagattgttgtcccactttcatcaataagtgcaaataagca 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5379 atctcctgtgtgtcgtggtgagattgttgtcccactttcatcaataagtgcaaataagca 5320
Query: 506 aactaaacttattatcattgactcaggcatggagatctgggtcatgaaagctcgtgacga 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5319 aactaaacttattatcattgactcaggcatggagatctgggtcatgaaagctcgtgacga 5260
Query: 566 aaaagattgggaactttggatttcaatgatcgagtcatgtttcaaacaagacgccccaac 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5259 aaaagattgggaactttggatttcaatgatcgagtcatgtttcaaacaagacgccccaac 5200
Query: 626 tacttcgcaagatcacgaatcgcataacgttgtcattcctcctgataatgataccacagc 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5199 tacttcgcaagatcacgaatcgcataacgttgtcattcctcctgataatgataccacagc 5140
Query: 686 attttttccgcaatttaccattccttaaggaaaagaatagaagaatgcaagttttcatcc 745
| ||||||||||||||| || ||| |||||||||||||||||||||||||| | ||| |
Sbjct: 5139 a-tttttccgcaatttaaca-tccctaaggaaaagaatagaagaatgcaag-tatcaatc 5083
Query: 746 tttatcctattctaactacacacct 770
|||||||||||||||||||||||||
Sbjct: 5082 tttatcctattctaactacacacct 5058
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7444
Number of Sequences: 1807
Number of extensions: 7444
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 966
length of database: 10,358,551
effective HSP length: 16
effective length of query: 950
effective length of database: 10,329,639
effective search space: 9813157050
effective search space used: 9813157050
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)