BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZH10FM1.SCF screened BAC_end
(907 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1757 1407 0.0
>3x_Contig1757
Length = 24754
Score = 1407 bits (710), Expect = 0.0
Identities = 788/808 (97%), Gaps = 5/808 (0%)
Strand = Plus / Plus
Query: 88 tattttgcaaaacccttctttcaaaaatgcttccgagcaagaacaaatttctgctttaat 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20244 tattttgcaaaacccttctttcaaaaatgcttccgagcaagaacaaatttctgctttaat 20303
Query: 148 tgctattctcaactctgatcctcagacagcaatgccgcatgcggctcctgttgccacttc 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20304 tgctattctcaactctgatcctcagacagcaatgccgcatgcggctcctgttgccacttc 20363
Query: 208 tactacaacggcagcatccgaatcaaaaggcaagaacgttcgtttcccacgtccaaacat 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20364 tactacaacggcagcatccgaatcaaaaggcaagaacgttcgtttcccacgtccaaacat 20423
Query: 268 gtcccagccaatgtctgccgaggagaaggagagatattcagaatatttaaacggtgagac 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20424 gtcccagccaatgtctgccgaggagaaggagagatattcagaatatttaaacggtgagac 20483
Query: 328 taagattacagagattcaatcttttccaccaaaatcaagattgttcattggtaacttacc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20484 taagattacagagattcaatcttttccaccaaaatcaagattgttcattggtaacttacc 20543
Query: 388 tctgaaaaacgttacgaaagaggacttattccgtatattctcaccttatggtcatatttt 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20544 tctgaaaaacgttacgaaagaggacttattccgtatattctcaccttatggtcatatttt 20603
Query: 448 tcaaatcaacatcaagaatgcttttggtttcattcagtacgataaccaaagatccgtgct 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20604 tcaaatcaacatcaagaatgcttttggtttcattcagtacgataaccaaagatccgtgct 20663
Query: 508 agatgccattgaatgtgaatctgaggaaatgaatttcggtaagaagctaatcttagaagt 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20664 agatgccattgaatgtgaatctgaggaaatgaatttcggtaagaagctaatcttagaagt 20723
Query: 568 ttcaagttctaatgctagaccacaatttgaccatggtgaccacggttctaataccagttc 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20724 ttcaagttctaatgctagaccacaatttgaccatggtgaccacggttctaataccagttc 20783
Query: 628 cacctacgtcacttcaagcaagagaaactacgataacgaggaaaacgacgatgaagacat 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20784 cacctacgtcacttcaagcaagagaaactacgataacgaggaaaacgacgatgaagacat 20843
Query: 688 gtacagcgantatcattaccagaagtcaaagaagcgtacttcacaatgtctaatatacgt 747
||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 20844 gtacagcgataatcattacaagaagtcaaagaagcgtactccacaatgtctaatatacgt 20903
Query: 748 caagaaggccgcagatcgtacatatgcgtacangtgtttttacaatttaaagcaaaaaac 807
|||||||||||||||||||||||||||||||| |||||||||| | || ||||||||||
Sbjct: 20904 caagaaggccgcagatcgtacatatgcgtaca-gtgtttttaccaatttaagcaaaaaaa 20962
Query: 808 ccgg-ttggaaacggatatggttatcttgaaa-ctagnatggaactcaggaaaatggtt- 864
|||| ||||||||||||||||| ||||||||| | || |||||||| |||||| |||||
Sbjct: 20963 ccggtttggaaacggatatggtaatcttgaaaccaagaatggaactaaggaaattggtta 21022
Query: 865 acgaagca-cctaccatggtgtgtgggg 891
|||||||| | ||| |||||||||||||
Sbjct: 21023 acgaagcagcatacgatggtgtgtgggg 21050
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5960
Number of Sequences: 1807
Number of extensions: 5960
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 907
length of database: 10,358,551
effective HSP length: 16
effective length of query: 891
effective length of database: 10,329,639
effective search space: 9203708349
effective search space used: 9203708349
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)