BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZH10RM1.SCF screened BAC_end
(895 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1641 1487 0.0
>3x_Contig1641
Length = 13261
Score = 1487 bits (750), Expect = 0.0
Identities = 832/856 (97%), Gaps = 3/856 (0%)
Strand = Plus / Plus
Query: 40 acgacgaatccatctatgtctagaaggaactctgtctctcagtttagacgtgagtctatg 99
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12384 acgacgaatccatctatgtctagaaggaactctgtctctcagtttagacgtgagtctatg 12443
Query: 100 caagcaggtttcattgatatgcccataaaacaaagctctcaaccccctccttcatccgta 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12444 caagcaggtttcattgatatgcccataaaacaaagctctcaaccccctccttcatccgta 12503
Query: 160 tgtgccgttggatcattcaatggctttgcaaaaccttggtctggcgatgaggataagttg 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12504 tgtgccgttggatcattcaatggctttgcaaaaccttggtctggcgatgaggataagttg 12563
Query: 220 ttggtagaaaaacgtcaaaggtaccacttgtccattgatgagctttcaatcttgttacct 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12564 ttggtagaaaaacgtcaaaggtaccacttgtccattgatgagctttcaatcttgttacct 12623
Query: 280 catagatcagaacaagagatccaatggagaatggattcgttacatataacgcctagcgat 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12624 catagatcagaacaagagatccaatggagaatggattcgttacatataacgcctagcgat 12683
Query: 340 gcagttagtactgctagtccttccgccaatgttaatcaatcgagttcttcagatgaggtc 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12684 gcagttagtactgctagtccttccgccaatgttaatcaatcgagttcttcagatgaggtc 12743
Query: 400 cactctacttactcaccagatactgccgtagaggagcatgacgacattgacgatgttgat 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12744 cactctacttactcaccagatactgccgtagaggagcatgacgacattgacgatgttgat 12803
Query: 460 gttgatgtagagattgttggccgcatggaagactctattgccccaactcagctaagagat 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12804 gttgatgtagagattgttggccgcatggaagactctattgccccaactcagctaagagat 12863
Query: 520 gaatctcctacgttttctcaaacatcttcgactggttcttccgctcgtgagagatcgcca 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12864 gaatctcctacgttttctcaaacatcttcgactggttcttccgctcgtgagagatcgcca 12923
Query: 580 gtgttttcaccggacgctcattccttgagagaccattctccaactatttctgatgtgaac 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12924 gtgttttcaccggacgctcattccttgagagaccattctccaactatttctgatgtgaac 12983
Query: 640 aactcatctttttatggcaataggatgcctgccagcgtaccgaagcaaattcttcaaaca 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12984 aactcatctttttatggcaataggatgcctgccagcgtaccgaagcaaattcttcaaaca 13043
Query: 700 caggctagtaatgaacaaaacgcccagttcactccgaattcatcgcaatcttct-cacca 758
||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||
Sbjct: 13044 caggctagtaatgaacaaacgccccagttcactccgaattcatcgcaatctcctgaacca 13103
Query: 759 ccacaaaaccatcgactaccngcagtgccaacttagncactgcctattttgaatacgat- 817
||||| |||||||||||||| |||||||||| || ||||||||| ||||||||||||
Sbjct: 13104 ccacataaccatcgactaccgcaagtgccaactcagccactgcctagtttgaatacgata 13163
Query: 818 ttcaagcccattgtttgatgattaactgtctgtattaattacattttc-aggacccaaaa 876
||||||| |||||||||||||| |||||||||||||||| |||| || || ||| ||||
Sbjct: 13164 ttcaagcacattgtttgatgataaactgtctgtattaataccattatcaagaaccaaaaa 13223
Query: 877 cttttaaaactacttt 892
||| |||||||||||
Sbjct: 13224 cttaaaaaactacttt 13239
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5571
Number of Sequences: 1807
Number of extensions: 5571
Number of successful extensions: 28
Number of sequences better than 1.0e-20: 1
length of query: 895
length of database: 10,358,551
effective HSP length: 16
effective length of query: 879
effective length of database: 10,329,639
effective search space: 9079752681
effective search space used: 9079752681
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)