BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZH11FM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1708 733 0.0
3x_Contig1760 660 0.0
>3x_Contig1708
Length = 19451
Score = 733 bits (370), Expect = 0.0
Identities = 478/505 (94%), Gaps = 9/505 (1%)
Strand = Plus / Plus
Query: 388 atctcatcgataaagagattgcatgtcgacgcagcaactgataaagaaatttttaaagtc 447
|||||||||||||||||||||||| | | ||||||||||||||| ||||||||||||||
Sbjct: 1 atctcatcgataaagagattgcatttgtaggcagcaactgataaataaatttttaaagtc 60
Query: 448 acgtgacaagtatcaacagtttctgaaaaaatctgaaaatctcaattacaaaaggtttct 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgtgacaagtatcaacagtttctgaaaaaatctgaaaatctcaattacaaaaggtttct 120
Query: 508 aatcgcaagcaattctcttgttattcggttcaacctgcatttaaactcgaattataccgt 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aatcgcaagcaattctcttgttattcggttcaacctgcatttaaactcgaattataccgt 180
Query: 568 ctattgcctgattctctgactaagcgaagcagtttattatgtctaagttntatgacgatg 627
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 181 ctattgcctgattctctgactaagcgaagcagtttattatgtctaagttttatgacgatg 240
Query: 628 atgacgctgtggattatgacgacgatgtacctgatttccaggacgaggatgaatttgacg 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atgacgctgtggattatgacgacgatgtacctgatttccaggacgaggatgaatttgacg 300
Query: 688 attattttaacgatgaaagatttgaanttgatgaacccagntgttttcccctggcgaagg 747
||||||| ||||||||| ||||||| |||||||| |||| || ||||||||||||||||
Sbjct: 301 attatttaaacgatgaagaatttgaa-ttgatgaa-ccagttg-tttcccctggcgaagg 357
Query: 748 agcantttagctgattatcaggggttgggataactttggnccgtgaaagttgcgattttt 807
|||| |||||||||||||| ||||||||||||||| | ||||||||||||||||||||
Sbjct: 358 agcaa-ttagctgattatca-gggttgggataactt--ggccgtgaaagttgcgattttt 413
Query: 808 gatcacaatttcgagttagaacctgcattgtgccgatttaaagagaagatttcaggaaaa 867
|||||||||||||||||||||||||||||| | |||||||||||||||| |||| |||||
Sbjct: 414 gatcacaatttcgagttagaacctgcattg-gtcgatttaaagagaaga-ttcaagaaaa 471
Query: 868 agggtttttttatttggcattggac 892
||||| | | || ||||||||||||
Sbjct: 472 agggtatgtataattggcattggac 496
>3x_Contig1760
Length = 27266
Score = 660 bits (333), Expect = 0.0
Identities = 340/341 (99%), Gaps = 1/341 (0%)
Strand = Plus / Plus
Query: 87 ccccttccatagcaaatgctggggttcccacgctcttgcaatgctt-cgcggtacgatat 145
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 26926 ccccttccatagcaaatgctggggttcccacgctcttgcaatgctttcgcggtacgatat 26985
Query: 146 tatacaaaacacaactctgtatcactcgttgatgcgttgtcagcacattctccggaactg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26986 tatacaaaacacaactctgtatcactcgttgatgcgttgtcagcacattctccggaactg 27045
Query: 206 tcatccgaaaacgtatcggctatatcacttctgttctcttcaaaatattacctaggaaat 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27046 tcatccgaaaacgtatcggctatatcacttctgttctcttcaaaatattacctaggaaat 27105
Query: 266 tcaactcgttcacctgttaaatcacctaccgggaattaccttcttgaccaaaaaaagaat 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27106 tcaactcgttcacctgttaaatcacctaccgggaattaccttcttgaccaaaaaaagaat 27165
Query: 326 gtactaatggacaaactgcactgtttacaactcacttcatgctatcgataacaactcatc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27166 gtactaatggacaaactgcactgtttacaactcacttcatgctatcgataacaactcatc 27225
Query: 386 tcatctcatcgataaagagattgcatgtcgacgcagcaact 426
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 27226 tcatctcatcgataaagagattgcatgtcgacgcagcaact 27266
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7557
Number of Sequences: 1807
Number of extensions: 7557
Number of successful extensions: 304
Number of sequences better than 1.0e-20: 2
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)