BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZH11RM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1142 1251 0.0
>3x_Contig1142
Length = 5741
Score = 1251 bits (631), Expect = 0.0
Identities = 646/650 (99%), Gaps = 2/650 (0%)
Strand = Plus / Minus
Query: 46 ttttacgagattatccacgtatgaattgtaatcatctttgatcaatgtgaatgggtaaga 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 ttttacgagattatccacgtatgaattgtaatcatctttgatcaatgtgaatgggtaaga 591
Query: 106 gaaatcgatggtgaaactgaagaatttacccactggcaaatcctggttagcattcgaata 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 gaaatcgatggtgaaactgaagaatttacccactggcaaatcctggttagcattcgaata 531
Query: 166 atcatcttccgtagtgacacctttataccttagaaattcatgttgaggctcaaactctga 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 atcatcttccgtagtgacacctttataccttagaaattcatgttgaggctcaaactctga 471
Query: 226 agagacgactttgattctcaatttttcaagctgtgtcgctttcttcttacccccttcctc 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 agagacgactttgattctcaatttttcaagctgtgtcgctttcttcttacccccttcctc 411
Query: 286 tgtcttggatgtgactttcttcttaaagatgatctcatcatcagtattgataatgttgta 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tgtcttggatgtgactttcttcttaaagatgatctcatcatcagtattgataatgttgta 351
Query: 346 cagtgtgaataaatcttctttatcctgaggttgaagagtcaaaatggctctttccccact 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 cagtgtgaataaatcttctttatcctgaggttgaagagtcaaaatggctctttccccact 291
Query: 406 gtgtgaaccggtcactttattgattaacctcattgcttctttacccgttaacttgagaca 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 gtgtgaaccggtcactttattgattaacctcattgcttctttacccgttaacttgagaca 231
Query: 466 cctctttgggtacgttctgtattaagtgctgtttcaataaattgctgtcaggtgtataag 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 cctctttgggtacgttctgtattaagtgctgtttcaataaattgctgtcaggtgtataag 171
Query: 526 gtatgcttttgccaatacctctttatttcatgatttatagtcagatttcatttttaagct 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 gtatgcttttgccaatacctctttatttcatgatttatagtcagatttcatttttaagct 111
Query: 586 ttgaaaaaaaaaggtttgccatgaagataccgaagagaagaagcaactaggtaagttaca 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 ttgaaaaaaaaaggtttgccatgaagataccgaagagaagaagcaactaggtaagttaca 51
Query: 646 tggacaattacattgacaaaagtttgtt--cgtatggcttaatgtgtaaa 693
|||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 50 tggacaattacattgacaaaagtttgtttctgtatcgcttaatgtgtaaa 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8282
Number of Sequences: 1807
Number of extensions: 8282
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)