BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZH12FM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig791 733 0.0
3x_Contig519 561 e-160
>3x_Contig791
Length = 3989
Score = 733 bits (370), Expect = 0.0
Identities = 377/378 (99%), Gaps = 1/378 (0%)
Strand = Plus / Plus
Query: 88 tgtaatgtagcatcagatgaactatgttgccaagcatttcccccataggacccaattgac 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3613 tgtaatgtagcatcagatgaactatgttgccaagcatttcccccataggacccaattgac 3672
Query: 148 cttctgtccgataccttctcaaaattctcaaaagaatccgcatagacgctttccgttgtt 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3673 cttctgtccgataccttctcaaaattctcaaaagaatccgcatagacgctttccgttgtt 3732
Query: 208 ttcctttgtatattttctatcacttctttcgacattggttctctcatatcatacaactca 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3733 ttcctttgtatattttctatcacttctttcgacattggttctctcatatcatacaactca 3792
Query: 268 tcgtttttgtctaaaagtgacaaacattgcagtaaatatttatgtttttcttccggactt 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3793 tcgtttttgtctaaaagtgacaaacattgcagtaaatatttatgtttttcttccggactt 3852
Query: 328 gagagatggcacatgatgccggcaaacatttctaaatgagaccaacttttcatgtcctga 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3853 gagagatggcacatgatgccggcaaacatttctaaatgagaccaacttttcatgtcctga 3912
Query: 388 ttgcgttgcaccattatttttttataatattccaatacttttgtgacattttcctttgat 447
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3913 ttgcg-tgcaccattatttttttataatattccaatacttttgtgacattttcctttgat 3971
Query: 448 gatgttttgatagagtag 465
||||||||||||||||||
Sbjct: 3972 gatgttttgatagagtag 3989
>3x_Contig519
Length = 1492
Score = 561 bits (283), Expect = e-160
Identities = 392/419 (93%), Gaps = 7/419 (1%)
Strand = Plus / Minus
Query: 453 tttgatagagtagtaaaggtcctgaattaattgctgagaatacgcactgccagcagatgc 512
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 1490 tttgatagagtagtaaaggcccggaattaattgctgagaatacgcactgccagcagatgc 1431
Query: 513 aggaagcatgtgtagtacacatgtgccaaatttttggtccattattgttttttccgttac 572
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1430 aggaagcatgtgtagtacacatgtgccaaatttttggtccattattg-tttttccgttac 1372
Query: 573 cccacagtagagataggggaagaggctctttttcacatcttttacctttcactttagcgc 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1371 cccacagtagagataggggaagaggctctttttcacatcttttacctttcactttagcgc 1312
Query: 633 acaaatcggtctttgtttgttgatattttcaccaaacaatatcgatctactgttgttgta 692
|||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1311 acaaatcgttc-ttgtttgttgatattttcacaaaacaatatcgatctactgttgttgta 1253
Query: 693 tcccatgatgttaacattaaagtgaaaaaggttgtgaaataatcacgtgattgacctttg 752
||| ||||||| |||| |||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 1252 tccaatgatgtaaaca-taaagtgaaaaaggttgtgaaatagtcacgtgattga-ctttg 1195
Query: 753 gtgaccatcacaaggattggaggaaagacttttgcagacatacatggttacatatttttt 812
||||||||||||||||||| ||||||||| | |||||||||||||| |||||| | | |
Sbjct: 1194 gtgaccatcacaaggattgaaggaaagacatatgcagacatacatgtatacataatatat 1135
Query: 813 atttcaat-cag-acatgtttaatacattggttaaac-tatttttatgccatatttttt 868
|| ||||| ||| |||||| ||||||||| ||| ||| |||| ||||||||||||||||
Sbjct: 1134 atatcaatacagtacatgtataatacatttgtttaacttattattatgccatatttttt 1076
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8380
Number of Sequences: 1807
Number of extensions: 8380
Number of successful extensions: 71
Number of sequences better than 1.0e-20: 2
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)