BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZH12RM1.SCF screened BAC_end
(966 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig955 1404 0.0
>3x_Contig955
Length = 4159
Score = 1404 bits (708), Expect = 0.0
Identities = 813/832 (97%), Gaps = 12/832 (1%)
Strand = Plus / Minus
Query: 47 tggaggaagcaaaatttttgaagtggtggaatgaagaat-acaaaggatacaagcccaac 105
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1587 tggaggaagcaaaatttttgaagtggtggaatgaagaatcacaaaggatacaagcccaac 1528
Query: 106 aagcggcgtcggagatgctaatgggaatggagaccggaatcccatcttcgaagcctggtt 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1527 aagcggcgtcggagatgctaatgggaatggagaccggaatcccatcttcgaagcctggtt 1468
Query: 166 cccttaaaaaatcttcttcgatacaatctaatggtaaacgcaaaagtaaatcatcggata 225
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1467 cccttaaaaaatcttcttcgatacaatctaatggtaaacgcaaaagtaaatcagcggata 1408
Query: 226 aatctatgcgtggaaataacacatccaaaatatcgacaaatcaacctgaaaagcatgatc 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1407 aatctatgcgtggaaataacacatccaaaatatcgacaaatcaacctgaaaagcatgatc 1348
Query: 286 agacatccaatacgagtaacaatcgaagaagaagttgcacaaatccaaatagacaatcct 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1347 agacatccaatacgagtaacaatcgaagaagaagttgcacaaatccaaatagacaatcct 1288
Query: 346 aaatacatgttatagagcataccaaatctcgctaagtggtataattcagagcaacaatcg 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1287 aaatacatgttatagagcataccaaatctcgctaagtggtataattcagagcaacaatcg 1228
Query: 406 gtactaaaaaaggcagctgaaccacttaatcagtatgcgcttgatatcgttcttgatcac 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1227 gtactaaaaaaggcagctgaaccacttaatcagtatgcgcttgatatcgttcttgatcac 1168
Query: 466 atatgtgatcttacaagttatgtatatctatatcaacttaatcgtgtaaatattaaatgg 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1167 atatgtgatcttacaagttatgtatatctatatcaacttaatcgtgtaaatattaaatgg 1108
Query: 526 tcatgttctacttattctgcgctttgtactaatggtagatgcaaggctaatcacattctg 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1107 tcatgttctacttattctgcgctttgtactaatggtagatgcaaggctaatcacattctg 1048
Query: 586 ccacgctttgttctttaaagtcaatgagactactctgaggtatgtccgttctgagatcat 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1047 ccacgctttgttctttaaagtcaatgagactactctgaggtatgtccgttctgagatcat 988
Query: 646 gtattatcatcattttccacgcggtttgttgtcctagcgatttgaaaaaatgtaaaattc 705
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 987 gtattatcatcattttccacgcggtttgttgtcctagcgatttgaaaaaatgt-aaattt 929
Query: 706 ccaaaaaataatgagtttgtgacttatccacacttcacttaagaaacctatgggatatcg 765
||||||||||||||| ||||||| |||||||||| ||| |||||||||||| ||||||||
Sbjct: 928 ccaaaaaataatgag-ttgtgac-tatccacactccac-taagaaacctat-ggatatcg 873
Query: 766 aatttctctgttgcccatcctatcatcatcgatcaacaattggctacaatggttgaagaa 825
|| |||||||||| ||||||||||||||||||||||| |||| |||||||||||| || |
Sbjct: 872 aa-ttctctgttg-ccatcctatcatcatcgatcaac-attgcctacaatggttg-agga 817
Query: 826 agaagtatgctaaatgtcttttatgttcaactgtaccttcaatgggtactga 877
||| |||||||||||||| |||||||||||||||| ||||||||| ||||||
Sbjct: 816 agaggtatgctaaatgtc-tttatgttcaactgta-cttcaatggttactga 767
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7119
Number of Sequences: 1807
Number of extensions: 7119
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 966
length of database: 10,358,551
effective HSP length: 16
effective length of query: 950
effective length of database: 10,329,639
effective search space: 9813157050
effective search space used: 9813157050
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)