BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZA01FM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1497 1072 0.0
>3x_Contig1497
Length = 11582
Score = 1072 bits (541), Expect = 0.0
Identities = 611/632 (96%), Gaps = 2/632 (0%)
Strand = Plus / Minus
Query: 88 taaccctttttaaaatcaggatctattcctgattttctacggcggatcgagtaccgatca 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9112 taaccctttttaaaatcaggatctattcctgattttctacggcggatcgagtaccgatca 9053
Query: 148 cccagttcaaagtacaatggcatttttacccaagagaattatcaaagtatgttgaaaatt 207
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 9052 cccagttcaaagtacaatggcagcattacccaagagaattatcaaagtatgttgaaaatt 8993
Query: 208 tttggaattaaactcgnttttttctatctgagtattaattaatagcgttataactaacca 267
||||||| || || | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 8992 tttggaaacttacacgttcttttctatctgagtattaattaatagcgttataactaacca 8933
Query: 268 agaaaaaaaaaaatatcatttacacaggaaactgaaaggttagtgagcgatccggtcccc 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8932 agaaaaaaaaaaatatcatttacacaggaaactgaaaggttagtgagcgatccggtcccc 8873
Query: 328 ggaatcactgcagaaccacatgaggataatttacgttatttccaagtgacgatagagggt 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8872 ggaatcactgcagaaccacatgaggataatttacgttatttccaagtgacgatagagggt 8813
Query: 388 ccgcagcaaagtccctatgaaaatggggtcttccaactagaattgttcctaccggatgat 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8812 ccgcagcaaagtccctatgaaaatggggtcttccaactagaattgttcctaccggatgat 8753
Query: 448 tatccaatggaagcaccaaaggtaaggtttttgacaaaaatataccatcccaatatcgat 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8752 tatccaatggaagcaccaaaggtaaggtttttgacaaaaatataccatcccaatatcgat 8693
Query: 508 cggttaggtagaatatgtctcgatgttttgaaaaataattggtcacctgcccttcaaatc 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8692 cggttaggtagaatatgtctcgatgttttgaaaaataattggtcacctgcccttcaaatc 8633
Query: 568 agaacagtacttttgtccgtgcaagccttgcttgcatttccgaatccgaatgatccgtta 627
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 8632 agaacagtacttttgtccgtgcaagccttgcttgcatctccgaatccgaatgaaaagtta 8573
Query: 628 gctaatgacgtcgctgaggaatggatcaagcatgaaaataccgcaattgcaaaggccaaa 687
|||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||
Sbjct: 8572 gctaatgacgtcgctgaggaatggatcaagcatgaagataccgcaattgaaaaggcaaaa 8513
Query: 688 gtattggaccaaactttactcccaaacctact 719
| | ||||||||||||||| |||||||||||
Sbjct: 8512 g-aatggaccaaactttac-gccaaacctact 8483
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,569
Number of Sequences: 1807
Number of extensions: 12569
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)