BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZA01RM1.SCF screened BAC_end
(891 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1782 1384 0.0
>3x_Contig1782
Length = 24703
Score = 1384 bits (698), Expect = 0.0
Identities = 755/770 (98%), Gaps = 3/770 (0%)
Strand = Plus / Plus
Query: 51 gcttcatcatgggaccctaccagggatcccaatttcaagtcccctcaggaactagacagt 110
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12386 gcttcatcatgg-accctaccagggatcccaatttcaagtcccctcaggaactagacagt 12444
Query: 111 gaggcacttcaatcaagcaccgatattccaaaaatcggtcctattatcccatatgtgcta 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12445 gaggcacttcaatcaagcaccgatattccaaaaatcggtcctattatcccatatgtgcta 12504
Query: 171 gctgattacaatacagctatagataaaccgattcgtcctcgtaagtataagaattttgcc 230
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 12505 gctgattacaatacagctatagataaaccgattcgtcctcgtaagtataagaaaaatgcc 12564
Query: 231 attaaacggaaattggcttcttcgatgacttctaccagtgacgattccaacgaacagcag 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12565 attaaacggaaattggcttcttcgatgacttctaccagtgacgattccaacgaacagcag 12624
Query: 291 catctgtcagcaaattcgaacaatgggttcatcccgttgaaacagagggaactacagccg 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12625 catctgtcagcaaattcgaacaatgggttcatcccgttgaaacagagggaactacagccg 12684
Query: 351 gtgtcagctgaaacgagtggtgattctgaatctgaatctgaatctcctgcagaaccggcg 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12685 gtgtcagctgaaacgagtggtgattctgaatctgaatctgaatctcctgcagaaccggcg 12744
Query: 411 aacgtagatttggatatagatccaaatccagaatcggatgaagttatggcttcggctcca 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12745 aacgtagatttggatatagatccaaatccagaatcggatgaagttatggcttcggctcca 12804
Query: 471 gtggctcatgcatccggttcggtctctggtccatctgggatggcagcagctgctgcagct 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12805 gtggctcatgcatccggttcggtctctggtccatctgggatggcagcagctgctgcagct 12864
Query: 531 gctgcatccctcgaccaagagattacttcgagaattcacaagttccaaatcgctgatttg 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12865 gctgcatccctcgaccaagagattacttcgagaattcacaagttccaaatcgctgatttg 12924
Query: 591 gaagaagtgcctcatgggattgtgcgtcaggccaacaactggaaggattatcaatttccg 650
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 12925 gaagaagtgcctcatgggattgtgcgtcaggccaacaactggaaggattatcaattcccg 12984
Query: 651 gctcatagactgaaacaaaggttaagaaactcaaataaattgcccttggtcattgttgct 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12985 gctcatagactgaaacaaaggttaagaaactcaaataaattgcccttggtcattgttgct 13044
Query: 711 tgtggatcgttctcttcaatcacgtacctttatttgaaaatgtttgagatggcatgggat 770
||||||||||||||| |||||||||||||| |||||| ||||||||||||||||| ||||
Sbjct: 13045 tgtggatcgttctctccaatcacgtaccttcatttgagaatgtttgagatggcattggat 13104
Query: 771 gccatttcctgaacagaccaaatttgaagtcattgggggggtactacagt 820
|| |||| |||||||||||| ||||||||||| | || ||||||||||||
Sbjct: 13105 gcaattt-ctgaacagaccagatttgaagtca-tcggtgggtactacagt 13152
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5712
Number of Sequences: 1807
Number of extensions: 5712
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 891
length of database: 10,358,551
effective HSP length: 16
effective length of query: 875
effective length of database: 10,329,639
effective search space: 9038434125
effective search space used: 9038434125
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)