BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZA02FM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1114 938 0.0
>3x_Contig1114
Length = 6488
Score = 938 bits (473), Expect = 0.0
Identities = 508/517 (98%), Gaps = 2/517 (0%)
Strand = Plus / Minus
Query: 87 ttaaatcaagtaaatcgattaaaagagagatgggatagtctagtggaaagtgcaaagcag 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4582 ttaaatcaagtaaatcgattaaaagagagatgggatagtctagtggaaagtgcaaagcag 4523
Query: 147 aagaggaatcaacagcaagcataagtatgtattgctttaaagtatatcttaatcgttctt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4522 aagaggaatcaacagcaagcataagtatgtattgctttaaagtatatcttaatcgttctt 4463
Query: 207 gttattttaatgcactttttttgatgatttcgattaactatttgaagggagaaattatat 266
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4462 gttattttaatgcacaatttttgatgatttcgattaactatttgaagggagaaattatat 4403
Query: 267 agtacaaacagacctccattcctctatttagccttgagcccgtgcataatctcttcctta 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4402 agtacaaacagacctccattcctctatttagccttgagcccgtgcataatctcttcctta 4343
Query: 327 gtgattagatgaccgatggtttcaatatggtctagtaattgatccacatttgccgaccat 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4342 gtgattagatgaccgatggtttcaatatggtctagtaattgatccacatttgccgaccat 4283
Query: 387 tcgttgagcagatcactagagttgtttggcttaccaaagttcacaatcttttcaggtcta 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4282 tcgttgagcagatcactagagttgtttggcttaccaaagttcacaatcttttcaggtcta 4223
Query: 447 tttatctttgcgtaaatgataccctggttgaccaaatcactgataaacgactctgtcttg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4222 tttatctttgcgtaaatgataccctggttgaccaaatcactgataaacgactctgtcttg 4163
Query: 507 ggctcatctaaatctaatatcctctttaaccttggcaaaataatttttgtatagtatttt 566
| ||||||||||||||||| | |||||||||||||||| |||||||||||||||| |||
Sbjct: 4162 gcctcatctaaatctaatagctcctttaaccttggcaaagtaatttttgtatagta-ttt 4104
Query: 567 ggaaatgacacgcaagtttgtgctctatgattctctt 603
|||||||||||||||| ||||||||||||||||||||
Sbjct: 4103 ggaaatgacacgcaag-ttgtgctctatgattctctt 4068
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,666
Number of Sequences: 1807
Number of extensions: 17666
Number of successful extensions: 297
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)