BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC5ZA02RM1.SCF screened BAC_end
         (923 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1444                                                        1279   0.0  

>3x_Contig1444 
          Length = 7580

 Score = 1279 bits (645), Expect = 0.0
 Identities = 688/701 (98%), Gaps = 1/701 (0%)
 Strand = Plus / Plus

                                                                        
Query: 45   gcttcttcgacaatgcatcatttataaagaaagtcattcggccatactcatcggtcctcg 104
            |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 4131 gcttcttcgacaatgcatcattcaaaaagaaagtcattcggccatactcatcggtcctcg 4190

                                                                        
Query: 105  atccaattataaagatatgataataaagcatcatttggaggctttaagatcgacacacaa 164
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4191 atccaattataaagatatgataataaagcatcatttggaggctttaagatcgacacacaa 4250

                                                                        
Query: 165  cgaacaattcattgttatcaacttaaatggctctttacattcggaaaactctgtttttaa 224
            |||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||
Sbjct: 4251 cgaacaattcattgttatcaacttaaatggctctttacattcggaaaactctgcaattaa 4310

                                                                        
Query: 225  cagtattgctgaacaattagaattcgaacttgcaaacagaaacgttaattcatcaaaaaa 284
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4311 cagtattgctgaacaattagaattcgaacttgcaaacagaaacgttaattcatcaaaaaa 4370

                                                                        
Query: 285  agttaaagcagaagaattaggtttatctgaaggtactttgacagaagtctttgataacat 344
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4371 agttaaagcagaagaattaggtttatctgaaggtactttgacagaagtctttgataacat 4430

                                                                        
Query: 345  tctaagattgttggactcatttactgtgactcctctaaagggtgtacactcacagaaaga 404
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4431 tctaagattgttggactcatttactgtgactcctctaaagggtgtacactcacagaaaga 4490

                                                                        
Query: 405  aaaatcagagcacgtaacgctagtgttcatatttgatgaaattgacaaatttgctggacc 464
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4491 aaaatcagagcacgtaacgctagtgttcatatttgatgaaattgacaaatttgctggacc 4550

                                                                        
Query: 465  agtgagacagacacttttgtataatttatttgacctagtagagacttcaaggataccagt 524
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4551 agtgagacagacacttttgtataatttatttgacctagtagagacttcaaggataccagt 4610

                                                                        
Query: 525  ttgtgttcttggtcttactacaaagttggcaatcatgcaatttcttgaaaacagagtgaa 584
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4611 ttgtgttcttggtcttactacaaagttggcaatcatgcaatttcttgaaaacagagtgaa 4670

                                                                        
Query: 585  atcccggttttctcagcgaatcatatatatgccatcaatcttggattatgatcaattcaa 644
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 4671 atcccggttttctcagcgaatcatatatatgccatcaatctcggattatgatcaattcaa 4730

                                                                        
Query: 645  gcatgtattcaaagagctcttacaggtggatgattcaacaattcctgatcagcttccatg 704
            |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 4731 gcatgtattcaaagagctcttagaggtggatgattcaacaattcctgatcagcttcgatg 4790

                                                     
Query: 705  gaaccaggtctttgatgaggacttttaaaaatgactattca 745
            ||||||| |||| ||||| |||||| ||||||||| |||||
Sbjct: 4791 gaaccagttcttggatga-gactttaaaaaatgacgattca 4830


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8081
Number of Sequences: 1807
Number of extensions: 8081
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)