BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC5ZA03FM1.SCF screened BAC_end
         (1062 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1770                                                         700   0.0  

>3x_Contig1770 
          Length = 29267

 Score =  700 bits (353), Expect = 0.0
 Identities = 404/419 (96%), Gaps = 2/419 (0%)
 Strand = Plus / Minus

                                                                         
Query: 125   tgcagaaaacttggagaagctaacaaacacacatacactntccgtctgtattattttctg 184
             ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 12196 tgcagaaaacttggagaagctaacaaacacacatacact-tccgtctgtattattttctg 12138

                                                                         
Query: 185   atccagcaacgtattggtacaacttacctatatgcgcgccaggttcgaagaattccttgt 244
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12137 atccagcaacgtattggtacaacttacctatatgcgcgccaggttcgaagaattccttgt 12078

                                                                         
Query: 245   tttcagcctatttttttttcgccaatgncggnttaaacaagaaggagaaggaaagaaaaa 304
             |||||||||||   | |||||  |||| ||| ||||||||||||||||||||||||||||
Sbjct: 12077 tttcagcctataactctttcgttaatgtcggtttaaacaagaaggagaaggaaagaaaaa 12018

                                                                         
Query: 305   gactgcaactatcgaaaaagaaagtagtcatgagtgatttgttaatgagtatcgatgatt 364
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12017 gactgcaactatcgaaaaagaaagtagtcatgagtgatttgttaatgagtatcgatgatt 11958

                                                                         
Query: 365   tgatagaaaatgattatccaattcacttggattcaccaggtctaatagaagagttcaagg 424
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11957 tgatagaaaatgattatccaattcacttggattcaccaggtctaatagaagagttcaagg 11898

                                                                         
Query: 425   aaacattggaaaaattatactcgtccccttattattcagagtggacggacaccaagacta 484
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11897 aaacattggaaaaattatactcgtccccttattattcagagtggacggacaccaagacta 11838

                                                                        
Query: 485   ttgaccgtgatggcccttgaacattttgcaatagattgttaaaagggtatgtcaaaaaa 543
             ||||||||||||||||| ||||| ||||||||||||||| ||| | |||||||| ||||
Sbjct: 11837 ttgaccgtgatggccctcgaaca-tttgcaatagattgtgaaatgtgtatgtcagaaaa 11780


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,056
Number of Sequences: 1807
Number of extensions: 21056
Number of successful extensions: 130
Number of sequences better than 1.0e-20: 1
length of query: 1062
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1046
effective length of database: 10,329,639
effective search space: 10804802394
effective search space used: 10804802394
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)