BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC5ZA03FM1.SCF screened BAC_end (1062 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1770 700 0.0 >3x_Contig1770 Length = 29267 Score = 700 bits (353), Expect = 0.0 Identities = 404/419 (96%), Gaps = 2/419 (0%) Strand = Plus / Minus Query: 125 tgcagaaaacttggagaagctaacaaacacacatacactntccgtctgtattattttctg 184 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 12196 tgcagaaaacttggagaagctaacaaacacacatacact-tccgtctgtattattttctg 12138 Query: 185 atccagcaacgtattggtacaacttacctatatgcgcgccaggttcgaagaattccttgt 244 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12137 atccagcaacgtattggtacaacttacctatatgcgcgccaggttcgaagaattccttgt 12078 Query: 245 tttcagcctatttttttttcgccaatgncggnttaaacaagaaggagaaggaaagaaaaa 304 ||||||||||| | ||||| |||| ||| |||||||||||||||||||||||||||| Sbjct: 12077 tttcagcctataactctttcgttaatgtcggtttaaacaagaaggagaaggaaagaaaaa 12018 Query: 305 gactgcaactatcgaaaaagaaagtagtcatgagtgatttgttaatgagtatcgatgatt 364 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12017 gactgcaactatcgaaaaagaaagtagtcatgagtgatttgttaatgagtatcgatgatt 11958 Query: 365 tgatagaaaatgattatccaattcacttggattcaccaggtctaatagaagagttcaagg 424 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11957 tgatagaaaatgattatccaattcacttggattcaccaggtctaatagaagagttcaagg 11898 Query: 425 aaacattggaaaaattatactcgtccccttattattcagagtggacggacaccaagacta 484 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11897 aaacattggaaaaattatactcgtccccttattattcagagtggacggacaccaagacta 11838 Query: 485 ttgaccgtgatggcccttgaacattttgcaatagattgttaaaagggtatgtcaaaaaa 543 ||||||||||||||||| ||||| ||||||||||||||| ||| | |||||||| |||| Sbjct: 11837 ttgaccgtgatggccctcgaaca-tttgcaatagattgtgaaatgtgtatgtcagaaaa 11780 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 21,056 Number of Sequences: 1807 Number of extensions: 21056 Number of successful extensions: 130 Number of sequences better than 1.0e-20: 1 length of query: 1062 length of database: 10,358,551 effective HSP length: 16 effective length of query: 1046 effective length of database: 10,329,639 effective search space: 10804802394 effective search space used: 10804802394 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)