BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC5ZA03RM1.SCF screened BAC_end
         (1013 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig220                                                          801   0.0  

>3x_Contig220 
          Length = 1055

 Score =  801 bits (404), Expect = 0.0
 Identities = 444/452 (98%), Gaps = 4/452 (0%)
 Strand = Plus / Minus

                                                                       
Query: 87  tataataaacagtctgattatcataagagaaggttccttaggaatttggatgaagaagtg 146
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tataataaacagtctgattatcataagagaaggttccttaggaatttggatgaagaagtg 398

                                                                       
Query: 147 gatgaagagcaagtgaaagatgtgaaaagaaggaaaaccgataaggatggtgataaggaa 206
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gatgaagagcaagtgaaagatgtgaaaagaaggaaaaccgataaggatggtgataaggaa 338

                                                                       
Query: 207 gaggaaagtggcggtggatatacgatgcccaagacttcgcagcatattattattgagctc 266
           |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 337 gaggaaagtggcggtggatatacgatgcccaagacttcgcagcatattataactgagctc 278

                                                                       
Query: 267 tcggaagagatggttactgaagttccaggggtacgtaatcttcagttctttaagccttca 326
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tcggaagagatggttactgaagttccaggggtacgtaatcttcagttctttaagccttca 218

                                                                       
Query: 327 gacagacaacatttcgcaattttgtttgatgaaaggtctccagaagatatgactgaagag 386
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 gacagacaacatttcgcaattttgtttgatgaaaggtctccagaagatatgactgaagag 158

                                                                       
Query: 387 gaaaggaaacagaaacaggttttaaaattggtacttaaggtgaaaaatgggttaccaagc 446
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 gaaaggaaacagaaacaggttttaaaattggtacttaaggtgaaaaatgggttaccaagc 98

                                                                       
Query: 447 tctaggaaaatagctctcagagcactcactcaaaaggcacc-ctcttt-cggggcaccat 504
           ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 97  tctaggaaaatagctctcagagcactcactcaaaaggcacctctctttgcggggcaccat 38

                                           
Query: 505 tgtt-atttgatttgatctttgcccattcttc 535
           |||| ||||||||  ||| |||||||||||||
Sbjct: 37  tgttgatttgattctatc-ttgcccattcttc 7


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7564
Number of Sequences: 1807
Number of extensions: 7564
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 1013
length of database: 10,358,551
effective HSP length: 16
effective length of query: 997
effective length of database: 10,329,639
effective search space: 10298650083
effective search space used: 10298650083
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)