BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZA04FM1.SCF screened BAC_end
(896 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1781 1342 0.0
>3x_Contig1781
Length = 20717
Score = 1342 bits (677), Expect = 0.0
Identities = 696/700 (99%), Gaps = 2/700 (0%)
Strand = Plus / Plus
Query: 90 cagaaacaattgatcccgtgttattatcaatctttggacacaggttcatggatattgcag 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16629 cagaaacaattgatcccgtgttattatcaatctttggacacaggttcatggatattgcag 16688
Query: 150 agcagatgggtaatcagttgagaaagacgtctgtatcgacaaacgtgaaggaaaggctag 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16689 agcagatgggtaatcagttgagaaagacgtctgtatcgacaaacgtgaaggaaaggctag 16748
Query: 210 atttctcttgtgcactatttgacaaagatggtaacttagtggctaacgcacctcacgttc 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16749 atttctcttgtgcactatttgacaaagatggtaacttagtggctaacgcacctcacgttc 16808
Query: 270 cagtgcacttgggttcgatgtcaacttgcataaagatgcaagcaaaactctgggaaggta 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16809 cagtgcacttgggttcgatgtcaacttgcataaagatgcaagcaaaactctgggaaggta 16868
Query: 330 aattaaaaccaggcgactcaataatgacgaaccatccggagatgggtggtacacatctac 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16869 aattaaaaccaggcgactcaataatgacgaaccatccggagatgggtggtacacatctac 16928
Query: 390 cggacattactgtaatcacaccagcgttcgaccccaaagatgcgactcgtatcttgttct 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16929 cggacattactgtaatcacaccagcgttcgaccccaaagatgcgactcgtatcttgttct 16988
Query: 450 atgtagcgtcaagagcgcatcatgcagatatcggcggatccttacctggttccatgcccc 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16989 atgtagcgtcaagagcgcatcatgcagatatcggcggatccttacctggttccatgcccc 17048
Query: 510 cattttcaagagagttgtacgaggaaggtgccgccatatacagtgagaagttggtagaag 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17049 cattttcaagagagttgtacgaggaaggtgccgccatatacagtgagaagttggtagaag 17108
Query: 570 atggtatattcgacgaagcgaaagtcgtcaaattgtttttcgatgaaccggcacagtacc 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17109 atggtatattcgacgaagcgaaagtcgtcaaattgtttttcgatgaaccggcacagtacc 17168
Query: 630 ctggttgtagtgggtcgcgtaagcttgctgacaacgtatccgatttgaaggcccaaattg 689
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 17169 ctggttgtagtgggtcgcgtaagcttgctgacaacgtatccgatttgaaggcccaaatcg 17228
Query: 690 ccgccaacacanaggggatcctgttagttcggagaactagtgaaagagtatggattcaaa 749
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 17229 ccgccaacacaaaggggatcctgttag-tcggagaactagtgaaagagtatggattcaaa 17287
Query: 750 gagatcgaaagatacatgtattgcgatccaatcgaatgcc 789
|||||||||||||||||||| |||||||||||||||||||
Sbjct: 17288 gagatcgaaagatacatgta-tgcgatccaatcgaatgcc 17326
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4539
Number of Sequences: 1807
Number of extensions: 4539
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 896
length of database: 10,358,551
effective HSP length: 16
effective length of query: 880
effective length of database: 10,329,639
effective search space: 9090082320
effective search space used: 9090082320
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)