BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZA04RM1.SCF screened BAC_end
(905 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1782 1005 0.0
>3x_Contig1782
Length = 24703
Score = 1005 bits (507), Expect = 0.0
Identities = 579/599 (96%), Gaps = 3/599 (0%)
Strand = Plus / Minus
Query: 52 ctttactaatgcttttgacacagtaggaggcgtgctgttcaacaaaggagacgattccac 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4213 ctttactaatgcttttgacacagtaggaggcgtgctgttcaacaaaggagacgattccac 4154
Query: 112 gccattgctgttctcaaagtttgtttctcttccaccaagtttctgtttctcttgcttctt 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4153 gccattgctgttctcaaagtttgtttctcttccaccaagtttctgtttctcttgcttctt 4094
Query: 172 caatgcactacgtaaggtgtggctagccttctcgcttaacttactctcatccttatccgt 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4093 caatgcactacgtaaggtgtggctagccttctcgcttaacttactctcatccttatccgt 4034
Query: 232 atccagaaactgagccctagtttcgttaatgtcactcatgtcgttctcactggcaatgat 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4033 atccagaaactgagccctagtttcgttaatgtcactcatgtcgttctcactggcaatgat 3974
Query: 292 taactctgcaaattaaaatcaaatcacaaaaatcacagccaatatgaaacaattgcttta 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3973 taactctgcaaattaaaatcaaatcacaaaaatcacagccaatatgaaacaattgcttta 3914
Query: 352 ccagttgaatggtagtccttctgctatttttttctgtcgtcctttgtccctttcttcgta 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3913 ccagttgaatggtagtccttctgctatttttttctgtcgtcctttgtccctttcttcgta 3854
Query: 412 aaggtcagtcttaactcaatctttgttcaaatcctttattttttatgttgataatatgac 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3853 aaggtcagtcttaactcaatctttgttcaaatcctttattttttatgttgataatatgac 3794
Query: 472 aaagatcacctgaaatacggttacattattaaaagactatgttatcgcaggacaactac- 530
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 3793 aaagatcacctgaaatacggttacattattaaaagactatgtcatcgcaggacaactacg 3734
Query: 531 gacccaagaagaccgttaagtttctttaagcagttgatatatgttgatattatgggaaaa 590
|||| |||| ||||||||||| | |||||||||||||||||||||||| || || |||
Sbjct: 3733 gaccaaagaggaccgttaagtatacttaagcagttgatatatgttgata-tagtggtaaa 3675
Query: 591 ggtgttgggtataatggttttttttttggagtttcatgttcaaaaaacaagtattgaaa 649
|||||||| ||| || |||||||||||| |||||||||||| |||| |||| |||||
Sbjct: 3674 ggtgttggttat-attgttttttttttgagttttcatgttcaagaaacgagtagtgaaa 3617
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8518
Number of Sequences: 1807
Number of extensions: 8518
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 905
length of database: 10,358,551
effective HSP length: 16
effective length of query: 889
effective length of database: 10,329,639
effective search space: 9183049071
effective search space used: 9183049071
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)