BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZA05FM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1780 850 0.0
>3x_Contig1780
Length = 27883
Score = 850 bits (429), Expect = 0.0
Identities = 471/484 (97%), Gaps = 1/484 (0%)
Strand = Plus / Plus
Query: 92 cggattatcgcctacggtggtgatcgaagagcacacccacacataccttcacacaaagca 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25119 cggattatcgcctacggtggtgatcgaagagcacacccacacataccttcacacaaagca 25178
Query: 152 aggcacttcgatcgtatcacatattgagaataagaaaaaataaaaaaaaaaaagtcaact 211
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 25179 aggcacttcgatcgtatcacaaattgagaataagaaaaaataaaaaaaaaaaagtcaact 25238
Query: 212 acaaccattcttgnctccagggcaaagcacaaaatcttcctgctacagtatgttagaagg 271
||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25239 acaaccactctcgtctccagggcaaagcacaaaatcttcctgctacagtatgttagaagg 25298
Query: 272 caaaaaaatatgagatcagaacgaaaatagtaaaaaccgaaagagttaaaaagctgtaaa 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25299 caaaaaaatatgagatcagaacgaaaatagtaaaaaccgaaagagttaaaaagctgtaaa 25358
Query: 332 actagtaaaacaagcaaaactagctggaattctttcgatgtagggtttcaggtatacaga 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25359 actagtaaaacaagcaaaactagctggaattctttcgatgtagggtttcaggtatacaga 25418
Query: 392 ttggatcgtactttgactgttctttctatttcaaactgagactagcgcatggtggtttat 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25419 ttggatcgtactttgactgttctttctatttcaaactgagactagcgcatggtggtttat 25478
Query: 452 ttgtctttttactaagtttcgggtttcggtggtgctgaaggttgctccttgtatgtgtga 511
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25479 ttgtctttttactagttttcgggtttcggtggtgctgaaggttgctccttgtatgtgtga 25538
Query: 512 aaaagagaaacgaaaactgagatagggtttggaattttattcacaaatcgaaattagggc 571
|||||||||||||||||||||||||| ||| || |||||||| ||||||| |||||||
Sbjct: 25539 aaaagagaaacgaaaactgagataggtcttgatatcttattcac-aatcgaatttagggc 25597
Query: 572 aaaa 575
||||
Sbjct: 25598 aaaa 25601
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 27,053
Number of Sequences: 1807
Number of extensions: 27053
Number of successful extensions: 1837
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)