BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZA06FM1.SCF screened BAC_end
(1179 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1377 486 e-137
>3x_Contig1377
Length = 8397
Score = 486 bits (245), Expect = e-137
Identities = 329/353 (93%), Gaps = 3/353 (0%)
Strand = Plus / Minus
Query: 120 tacaaaaagagtagtagaaaatatgggaagaggttgaatattactgtgatttgcttggta 179
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1171 tacaaaaagagtagtagaaaatatgggaagaggttgaatattactgttatttgcttggta 1112
Query: 180 acattggtttcccgtcgtgtctgtgtcttgtgtgtatatcggacattgtctgatttcaat 239
||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||
Sbjct: 1111 acattggtttcccgtcgtgtctgtg-cgtgtgtgtatatcggtcattgtctgatttcaat 1053
Query: 240 aacttataaatttttttttggaaaaatcgagactacgtcggactctgaacagcggaggag 299
|||||||||| || |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1052 aacttataaacaaagttagggaaaaatcgagactacg-cggactctgaacagcggaggag 994
Query: 300 ttctacacatcaatatacggacacaaatgtacttctagaaagtaccttgctataacaata 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 993 ttctacacatcaatatacggacacaaatgtacttctagaaagtaccttgctataacaata 934
Query: 360 gtggatctatcagatttcagtccttgtgttatcaataatcatcttgagcatttattttcc 419
||| |||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 933 gtgtatctatcagattccagcccttgtgttatcaataatcagcttgagcatttattttcc 874
Query: 420 tttagtccttatttggtcattgaacgaaacttcaaaatttctggactggtttt 472
||| |||||||| |||||||||| || ||||| | | |||||||||||||||
Sbjct: 873 ttttgtccttatctggtcattgacggagacttc-agagttctggactggtttt 822
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 19,306
Number of Sequences: 1807
Number of extensions: 19306
Number of successful extensions: 2326
Number of sequences better than 1.0e-20: 1
length of query: 1179
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1163
effective length of database: 10,329,639
effective search space: 12013370157
effective search space used: 12013370157
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)