BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZA06RM1.SCF screened BAC_end
(1039 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1577 926 0.0
>3x_Contig1577
Length = 10627
Score = 926 bits (467), Expect = 0.0
Identities = 497/507 (98%)
Strand = Plus / Minus
Query: 82 cttatatgatatttttattcaacaatttatatatgaacagtatatgcgatattttgagta 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6012 cttatatgatatttttattcaacaatttatatatgaacagtatatgcgatattttgagta 5953
Query: 142 gtttatgttttattttttctttcgaagtatgtatggaagggacactagcaaatggttgtt 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5952 gtttatgttttattttttctttcgaagtatgtatggaagggacactagcaaatggttgtt 5893
Query: 202 gacttctttcttttgttcgaaattatggtacgagagcgagtcagccagagatttcatgga 261
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 5892 gacttctttcttttgttcgaaattatggtacgagagcgagtcagccagagattccatgga 5833
Query: 262 gtcttctgggactgagtcctccaaaacttttgtcaataataccaactcttttctttcaat 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5832 gtcttctgggactgagtcctccaaaacttttgtcaataataccaactcttttctttcaat 5773
Query: 322 ttgcatttcagtattgaaacgttccttgctgctctttatcttgtcgtacaacaactgctt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5772 ttgcatttcagtattgaaacgttccttgctgctctttatcttgtcgtacaacaactgctt 5713
Query: 382 ttgctcgtcagtgactttttctttccaaacctttttacatgatttacacatctcttggta 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5712 ttgctcgtcagtgactttttctttccaaacctttttacatgatttacacatctcttggta 5653
Query: 442 cctgaggtgtgcgttaagcatacaatccatttttgtctgtgaatgagatattattttcat 501
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 5652 cctgaggtgtgcgttaagcatagaatccatttttgtctgtgaatgagatattattttcat 5593
Query: 502 aagtggagtatgtctttccaagttcctgggacggtgcctcggagcttcttcttgttttat 561
||||||||||||||||||||||| | ||||||||||| | ||||||||||||||||||||
Sbjct: 5592 aagtggagtatgtctttccaagtacgtgggacggtgcattggagcttcttcttgttttat 5533
Query: 562 gtatctttggttccaaattagattaaa 588
||| || || | |||||||||||||||
Sbjct: 5532 gtacctctgttcccaaattagattaaa 5506
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,462
Number of Sequences: 1807
Number of extensions: 17462
Number of successful extensions: 162
Number of sequences better than 1.0e-20: 1
length of query: 1039
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1023
effective length of database: 10,329,639
effective search space: 10567220697
effective search space used: 10567220697
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)