BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZA07FM1.SCF screened BAC_end
(902 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1261 1292 0.0
>3x_Contig1261
Length = 9103
Score = 1292 bits (652), Expect = 0.0
Identities = 700/712 (98%), Gaps = 3/712 (0%)
Strand = Plus / Plus
Query: 91 tggatgagaaactatcgaatgaactatgttatatgcttagacactgcctgagagagaaat 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2239 tggatgagaaactatcgaatgaactatgttatatgcttagacactgcctgagagagaaat 2298
Query: 151 tagcgatggtgaaatctgcaagttaaaaattcattacccggatagaacgtgacaaaatat 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2299 tagcgatggtgaaatctgcaagttaaaaattcattacccggatagaacgtgacaaaatat 2358
Query: 211 aaaatgaacttttcagccggacaccacgtacaccgttaccgccggactttgaacattaga 270
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2359 aaaatgaacaaaacagccggacaccacgtacaccgttaccgccggactttgaacattaga 2418
Query: 271 ttgcgactcaccttgtcctatctatggcccggaaaaccattgttaggcccaaaaaaagtt 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2419 ttgcgactcaccttgtcctatctatggcccggaaaaccattgttaggcccaaaaaaagtt 2478
Query: 331 gaaaagtgaaaaaatgaaaaaagccagagataaaagaaatatgaaaaaaaacaaccagca 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2479 gaaaagtgaaaaaatgaaaaaagccagagataaaagaaatatgaaaaaaaacaaccagca 2538
Query: 391 agtaaaatttattccaattggtttctctctggagcgagatgagataacgttgaaatggtt 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2539 agtaaaatttattccaattggtttctctctggagcgagatgagataacgttgaaatggtt 2598
Query: 451 taaaagcacttggaaggtgattcaaattggttgtttttttgtggtagtcagttgggtaga 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2599 taaaagcacttggaaggtgattcaaattggttgtttttttgtggtagtcagttgggtaga 2658
Query: 511 ctatatttggtatcaggattgctctgttattttcttactgcggctctctgtctctctttc 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2659 ctatatttggtatcaggattgctctgttattttcttactgcggctctctgtctctctttc 2718
Query: 571 tccgtctctgctgtgtggattctcttcaattaaagatcccgcattctttcaatcgaaatc 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2719 tccgtctctgctgtgtggattctcttcaattaaagatcccgcattctttcaatcgaaatc 2778
Query: 631 caagttaaagaaaaacgcatatacaactcgtaactgaacgaagttgttgttttgatattt 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2779 caagttaaagaaaaacgcatatacaactcgtaactgaacgaagttgttgttttgatattt 2838
Query: 691 gccggttctttcgtttcatatttctatcaagaaaatgcgtaagtgtaaagtttttcgttg 750
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 2839 gccggttctttcgtttcataattctatcaagaaaatgcgtaagtgtaaag-ttttcgttg 2897
Query: 751 gtaattcccattccggattgggtcatttggttctgggaaaagactaggtatt 802
||||||||||| | | |||||||||||||| |||| | ||||||||||||||
Sbjct: 2898 gtaattcccatccggaattgggtcatttgg-tctgtg-aaagactaggtatt 2947
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8628
Number of Sequences: 1807
Number of extensions: 8628
Number of successful extensions: 84
Number of sequences better than 1.0e-20: 1
length of query: 902
length of database: 10,358,551
effective HSP length: 16
effective length of query: 886
effective length of database: 10,329,639
effective search space: 9152060154
effective search space used: 9152060154
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)