BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZA07RM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1777 932 0.0
>3x_Contig1777
Length = 26319
Score = 932 bits (470), Expect = 0.0
Identities = 545/562 (96%), Gaps = 6/562 (1%)
Strand = Plus / Plus
Query: 49 ctctacaaaaatacaatccatttgctctgatcccgaaaacaattcagcgactacgtaaag 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11072 ctctacaaaaatacaatccatttgctctgatcccgaaaacaattcagcgactacgtaaag 11131
Query: 109 atttggattatattttcttgccaggtccaagaagtactcgcccacgtgaagtggggtaga 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11132 atttggattatattttcttgccaggtccaagaagtactcgcccacgtgaagtggggtaga 11191
Query: 169 atgacaattatcgattctaaacccgtcaaaaatggttgcctgaagtcttgtatactctga 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11192 atgacaattatcgattctaaacccgtcaaaaatggttgcctgaagtcttgtatactctga 11251
Query: 229 catcctctcccataaatacggagaatcctcaggtgcggaaccgtaccttaatttcacaca 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11252 catcctctcccataaatacggagaatcctcaggtgcggaaccgtaccttaatttcacaca 11311
Query: 289 gtccccccagacaatcacttctctacgtaggtatgccttggagtcctttgatgcaaaatc 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11312 gtccccccagacaatcacttctctacgtaggtatgccttggagtcctttgatgcaaaatc 11371
Query: 349 tactagtggattagagttccaaatccagccattgttagccaatgcatattccttaccatc 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11372 tactagtggattagagttccaaatccagccattgttagccaatgcatattccttaccatc 11431
Query: 409 tttggcaagcaatctggtgaaataagggctcagttaatggcgattcaggagtgatttttc 468
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 11432 tttggcaagcaatctggtgaaataa-ggctcagttaatggcgattcaggagtgatttttc 11490
Query: 469 ccatcttt-gaccatgatcattaatccggaaatactttatgcgaattgaattaattggcc 527
|||||||| |||||||||||| |||||| |||||||||||||| |||| | ||||||| |
Sbjct: 11491 ccatctttggaccatgatcatcaatccgcaaatactttatgcg-attgta-taattggtc 11548
Query: 528 taagattacggcaaacgtccttatcgtatttcctgtccaagggttaaattcaatttatcc 587
||||||||| || |||||||| |||||||| | ||| |||||| ||||||||||| ||||
Sbjct: 11549 taagattac-gcgaacgtcctcatcgtattccttgtacaaggg-taaattcaattcatcc 11606
Query: 588 aaaattttgcgtgctttatttg 609
|||||||||||||||| |||||
Sbjct: 11607 aaaattttgcgtgcttcatttg 11628
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,316
Number of Sequences: 1807
Number of extensions: 16316
Number of successful extensions: 353
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)