BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZA08FM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1696 896 0.0
>3x_Contig1696
Length = 16725
Score = 896 bits (452), Expect = 0.0
Identities = 510/524 (97%), Gaps = 4/524 (0%)
Strand = Plus / Minus
Query: 223 aatatcaaaaccatgaagagtaatctagccgagttacagcaaagattagagatttacatg 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7653 aatatcaaaaccatgaagagtaatctagccgagttacagcaaagattagagatttacatg 7594
Query: 283 gatcgtgataacaaacaactagacgtggaaggatttagagcattatttgacaaaggtgaa 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7593 gatcgtgataacaaacaactagacgtggaaggatttagagcattatttgacaaaggtgaa 7534
Query: 343 aagtatctggaattgttgtcaaaaattcaacaaaaaagtctcagtgaactttcacctttg 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7533 aagtatctggaattgttgtcaaaaattcaacaaaaaagtctcagtgaactttcacctttg 7474
Query: 403 aacaaaaattttgagagcttgggtcttaatgttagtgaagagtatacgaaagtgaagcct 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7473 aacaaaaattttgagagcttgggtcttaatgttagtgaagagtatacgaaagtgaagcct 7414
Query: 463 ccaaagtcgaagaccgtgccatttgaaattttaaatgggacaatagatctcttgcattct 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7413 ccaaagtcgaagaccgtgccatttgaaattttaaatgggacaatagatctcttgcattct 7354
Query: 523 caattaaagcacatcatggatattattgaagataataattccacgtatgctattgatgat 582
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 7353 caattaaagcacatcagggatattattgaagataataattccacgtatgctattgaggat 7294
Query: 583 ttatttgaacagaaacttgaggtcgattcgttatatgaaaaaattgaacttttggtg-aa 641
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 7293 ttatttgaacagaaacttgaggtcgattcgttatatgaaaagattgaacttttggtgaaa 7234
Query: 642 aaaataatagcataccttaagta-cgtttgaagttgcttcaattcgtttatgatagaaag 700
||||||| |||| | | |||||| ||||||||||||||||||| |||||||||||| |||
Sbjct: 7233 aaaataagagcagagcataagtaccgtttgaagttgcttcaatccgtttatgatag-aag 7175
Query: 701 attgactggtcaaaatagagaacaagaaattgcccaaagaggct 744
|||||||| |||||| |||||||||||||||| |||||||||||
Sbjct: 7174 attgactgctcaaaagagagaacaagaaattg-ccaaagaggct 7132
Score = 256 bits (129), Expect = 7e-68
Identities = 129/129 (100%)
Strand = Plus / Minus
Query: 87 cactttacgctgctcgagaattggttgaagatgcgaaagaattagagaccccaccaacat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7790 cactttacgctgctcgagaattggttgaagatgcgaaagaattagagaccccaccaacat 7731
Query: 147 catacattcaacaattagagaatatgataactcaatacttagagtttgttgatgatcctt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7730 catacattcaacaattagagaatatgataactcaatacttagagtttgttgatgatcctt 7671
Query: 207 cttcgctca 215
|||||||||
Sbjct: 7670 cttcgctca 7662
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,500
Number of Sequences: 1807
Number of extensions: 10500
Number of successful extensions: 91
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)