BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZA08RM1.SCF screened BAC_end
(1111 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1605 803 0.0
>3x_Contig1605
Length = 12373
Score = 803 bits (405), Expect = 0.0
Identities = 456/469 (97%), Gaps = 3/469 (0%)
Strand = Plus / Plus
Query: 70 cttcgattactaggatcatattttagaaagtctccattaacatcgactgtttcggagcct 129
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 9339 cttcgattactaggatcatatcttagaaagtctccattaacatcgactgtttcggagcct 9398
Query: 130 ggaatcaagatatcaccaaaacagtttaccttctcagttagagtgcgagataaagaccgt 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9399 ggaatcaagatatcaccaaaacagtttaccttctcagttagagtgcgagataaagaccgt 9458
Query: 190 cctttcaaaataagcacaactaaaataaatgaacctgcctctaagttggatttttttt-a 248
|||| ||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 9459 ccttccaaaataagcacaactaaaataaatgaacctgcctctaagttggaaaacacttca 9518
Query: 249 accgtggtgcataatgaatatttgaattcattgcagctaccgtatcttgcacgaacatcg 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9519 accgtggtgcataatgaatatttgaattcattgcagctaccgtatcttgcacgaacatcg 9578
Query: 309 ttgcgagttagcaaatatgactataaacgagccgctcaattttccaacacactaaaaaga 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9579 ttgcgagttagcaaatatgactataaacgagccgctcaattttccaacacactaaaaaga 9638
Query: 369 actttgaaaactcaagacgcacacgaaagaatattctccatatccagtgaagatgttgct 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9639 actttgaaaactcaagacgcacacgaaagaatattctccatatccagtgaagatgttgct 9698
Query: 429 aaacttatttctagtctttttcaagtctctgaggataatgtttctcttgtcgctaaaaag 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9699 aaacttatttctagtctttttcaagtctctgaggataatgtttctcttgtcgctaaaaag 9758
Query: 489 cgttttctttgaaagggaatgttttacttaacattcccaaaataacaga 537
|| ||||||||||||||||||||| ||| || |||||||||||||||||
Sbjct: 9759 cg-tttctttgaaagggaatgtttcactgaa-attcccaaaataacaga 9805
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7621
Number of Sequences: 1807
Number of extensions: 7621
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 1111
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1095
effective length of database: 10,329,639
effective search space: 11310954705
effective search space used: 11310954705
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)