BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZA09FM1.SCF screened BAC_end
(988 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1553 636 0.0
>3x_Contig1553
Length = 8593
Score = 636 bits (321), Expect = 0.0
Identities = 345/353 (97%)
Strand = Plus / Minus
Query: 256 aatactacgaagtgcaatagattgtcagagatcataattatttcaaaggctccgtcgtta 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3952 aatactacgaagtgcaatagattgtcagagatcataattatttcaaaggctccgtcgtta 3893
Query: 316 attgtgtactaatatgcctattccacctttgtatacttcttctgcaggggatttcagatc 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3892 attgtgtactaatatgcctattccacctttgtatacttcttctgcaggggatttcagatc 3833
Query: 376 cgacacattcacgataccgacaaaagatttctggagccaagtgaccgatgcttcattggg 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3832 cgacacattcacgataccgacaaaagatttctggagccaagtgaccgatgcttcattggg 3773
Query: 436 agatactatcaatttagaagatacagatacgtgttcattggaagctagattatctgacga 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3772 agatactatcaatttagaagatacagatacgtgttcattggaagctagattatctgacga 3713
Query: 496 gattcttggtggcagggttcacagtggcgagaaatcagagggtcttgtttgcatgttaac 555
||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||
Sbjct: 3712 gattcttggtggcagggttcacagtggcgagaaatcagagggtttgttttgcatgtcaac 3653
Query: 556 aacattggcaaaccaaatagctgttccctcccacttgaattttccaccacctt 608
|||||||||||||||||||||||| | ||||||||||||||| |||||||||
Sbjct: 3652 aacattggcaaaccaaatagctgtccgctcccacttgaatttcgcaccacctt 3600
Score = 256 bits (129), Expect = 7e-68
Identities = 129/129 (100%)
Strand = Plus / Minus
Query: 118 cgtatccacagttaatatggctgcataatgtcatacgaaaatatagaaatgaaaatagta 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4091 cgtatccacagttaatatggctgcataatgtcatacgaaaatatagaaatgaaaatagta 4032
Query: 178 aatataagataccagaaagttgcaacataaagctgacattaaatacagtcatatgaaaga 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4031 aatataagataccagaaagttgcaacataaagctgacattaaatacagtcatatgaaaga 3972
Query: 238 aatactatc 246
|||||||||
Sbjct: 3971 aatactatc 3963
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8857
Number of Sequences: 1807
Number of extensions: 8857
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 988
length of database: 10,358,551
effective HSP length: 16
effective length of query: 972
effective length of database: 10,329,639
effective search space: 10040409108
effective search space used: 10040409108
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)